LOCUS       AMU92763.1               630 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis macrogoltabida propionate--CoA ligase protein.
ACCESSION   CP013345-272
PROTEIN_ID  AMU92763.1
SOURCE      Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus)
  ORGANISM  Sphingopyxis macrogoltabida
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 421025)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N
            (NBRC 111659), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284142
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 421025)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 3.0
            Genome Coverage       :: 60x
            Sequencing Technology :: Illumina MiSeq and PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:58:19
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 5,691
            CDS                          :: 5,518
            Pseudo Genes                 :: 111
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 58
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis macrogoltabida"
                     /mol_type="genomic DNA"
                     /strain="203N"
                     /isolation_source="activated sludge"
                     /culture_collection="NBRC:111659"
                     /db_xref="taxon:33050"
                     /plasmid="unnamed1"
                     /country="Japan: Kyoto"
                     /collection_date="1974"
     protein         /gene="prpE"
                     /locus_tag="ATM17_31385"
                     /gene_synonym="yahU"
                     /EC_number="6.2.1.17"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_014779369.1"
                     /note="catalyzes the formation of propionyl-CoA using
                     propionate as a substrate; PrpE from Ralstonia
                     solanacearum can produce acetyl-, propionyl-, butyryl- and
                     acrylyl-coenzyme A, and Salmonella enterica produces
                     propionyl- and butyryl-coenzyme A; not expressed in
                     Escherichia coli when grown on propionate/minimal media;
                     ATP-dependent; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSYSSIYAAS VADPAAFWME AAQLINWEQA PTRAGDAQPD GIWTWFPDGR LNTCHNAVDR
       61 HIAAGRGERT ALIHDSAMTG RVTRYTYADI QREVAQVAGM IRAQGVDLGD RVIIYMPMVP
      121 EAVFAMLACA RIGAVHSVVF GGFASHELAK RIDDAEPKLV LTASCGLEPG RTVAYKPLLD
      181 AAIALATHKV LYTVVLQRPE LTASLEAGRD IEWSEACAAA EPADCVPVSS DHPLYILYTS
      241 GTTGIAKGVV HDNGGHAVAM AWSVPNIYGV GTDEVFWAGS DIGWAVGHSY IVYGPLIHGC
      301 TSVMYEGKPV GTPDAGAFWR VIRDHEVDVF FTAPTAIRAV KREDPEGLLL AEKGSGRLRA
      361 LYLAGERADP DTLAWAETML GVPVIDHWWQ TELGWPALGT CIGLSDTRTR HGSAGRPIPG
      421 YSFAILDSED KELAAGEIGD IVLSLPLPPG CFPTLWQRHA HFQDAYLSQH PGFYTTGDAG
      481 MVDDDGFVHV MSRIDDIINV AGHRLSTGAI EQIVSAHPAV AECAVIGAND VIKGMIPIGF
      541 IVLKAGVQVS DDEVSREVVA RVRDELGPVA AFKSVHVVKA LPKTRSGKTL RATIRAIANG
      601 EAVATPATIE DPAALEHIYQ SVAETSKVEG
//