LOCUS AMU92763.1 630 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis macrogoltabida propionate--CoA ligase protein. ACCESSION CP013345-272 PROTEIN_ID AMU92763.1 SOURCE Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus) ORGANISM Sphingopyxis macrogoltabida Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 421025) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284142 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 421025) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 3.0 Genome Coverage :: 60x Sequencing Technology :: Illumina MiSeq and PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:58:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 5,691 CDS :: 5,518 Pseudo Genes :: 111 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis macrogoltabida" /mol_type="genomic DNA" /strain="203N" /isolation_source="activated sludge" /culture_collection="NBRC:111659" /db_xref="taxon:33050" /plasmid="unnamed1" /country="Japan: Kyoto" /collection_date="1974" protein /gene="prpE" /locus_tag="ATM17_31385" /gene_synonym="yahU" /EC_number="6.2.1.17" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_014779369.1" /note="catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSYSSIYAAS VADPAAFWME AAQLINWEQA PTRAGDAQPD GIWTWFPDGR LNTCHNAVDR 61 HIAAGRGERT ALIHDSAMTG RVTRYTYADI QREVAQVAGM IRAQGVDLGD RVIIYMPMVP 121 EAVFAMLACA RIGAVHSVVF GGFASHELAK RIDDAEPKLV LTASCGLEPG RTVAYKPLLD 181 AAIALATHKV LYTVVLQRPE LTASLEAGRD IEWSEACAAA EPADCVPVSS DHPLYILYTS 241 GTTGIAKGVV HDNGGHAVAM AWSVPNIYGV GTDEVFWAGS DIGWAVGHSY IVYGPLIHGC 301 TSVMYEGKPV GTPDAGAFWR VIRDHEVDVF FTAPTAIRAV KREDPEGLLL AEKGSGRLRA 361 LYLAGERADP DTLAWAETML GVPVIDHWWQ TELGWPALGT CIGLSDTRTR HGSAGRPIPG 421 YSFAILDSED KELAAGEIGD IVLSLPLPPG CFPTLWQRHA HFQDAYLSQH PGFYTTGDAG 481 MVDDDGFVHV MSRIDDIINV AGHRLSTGAI EQIVSAHPAV AECAVIGAND VIKGMIPIGF 541 IVLKAGVQVS DDEVSREVVA RVRDELGPVA AFKSVHVVKA LPKTRSGKTL RATIRAIANG 601 EAVATPATIE DPAALEHIYQ SVAETSKVEG //