LOCUS AMU92762.1 767 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis macrogoltabida TonB-dependent receptor protein. ACCESSION CP013345-271 PROTEIN_ID AMU92762.1 SOURCE Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus) ORGANISM Sphingopyxis macrogoltabida Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 421025) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284142 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 421025) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 3.0 Genome Coverage :: 60x Sequencing Technology :: Illumina MiSeq and PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:58:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 5,691 CDS :: 5,518 Pseudo Genes :: 111 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis macrogoltabida" /mol_type="genomic DNA" /strain="203N" /isolation_source="activated sludge" /culture_collection="NBRC:111659" /db_xref="taxon:33050" /plasmid="unnamed1" /country="Japan: Kyoto" /collection_date="1974" protein /locus_tag="ATM17_31380" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_018076108.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKTATFRILV SGAAILSPLH AAMAQEAAAP EAPAAQEETY PGEILVTAQR REERVQDIPV 61 AITAFGGQQV EKLGILSLEN IAPRVPSFYF GSFGAARPQL YIRGIGTRSF DPGSESSVGV 121 FVDDVYAGRA SGSFGSLRDV ERIEVLRGPQ GTLYGRNTIA GAINVITKGP TDYFTGEAEA 181 GISNYDGYSL FGAVGGPIAG DKLMFRVAGW KAERDGYQTN LQTGTKFQGI DNWGGRARLR 241 FAPSEQLTID LTAELSRDGD KAAFSGFSRG SGPAESLAGV ITPANPLATF LGRPGRTPIP 301 YFGGNAGNLS FDPYLDRKTE TYIGRVEYDA GFATITSISA LKKLRISDGR DLEGTSLDIA 361 NQLSNERSKQ FSQEIRITSD PSGPASFDGN LDWIIGAFYY RDRSARSDEF RLGVDSVVAL 421 LSGGPQVSTA ISDYEIDSYA IFGQATIHLG EKFEVTLGGR YTRDEKRAVQ QGLNTRPGVP 481 LIAVPFLVDN SATYESFDPR IVATYKFSPD ASIYASYSTG FKSGGFQYVP FSAAQANVLF 541 QPEDIKTYEV GFKSEWLDRR LRFNVAAFHY DYKDLQVSRI VDLGGGSAAS LISNAAASKI 601 YGADVELLLR PSDNIDFSVT YGYLDAKYDA YFTNADGVPP TAATDFSDRR LVRAPKHSIN 661 VGAEWRIPTG DNSGLTLRAD YALLDEFYHE PGNANPIYGG AVSLSREPSY GLLDLRAAYE 721 IGDFRITAYV TNATKQNYRR TVLALGSTLS DFPGEPRIYG LKVGYRF //