LOCUS AMU92733.1 870 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis macrogoltabida hypothetical protein protein. ACCESSION CP013345-242 PROTEIN_ID AMU92733.1 SOURCE Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus) ORGANISM Sphingopyxis macrogoltabida Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 421025) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284142 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 421025) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 3.0 Genome Coverage :: 60x Sequencing Technology :: Illumina MiSeq and PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:58:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 5,691 CDS :: 5,518 Pseudo Genes :: 111 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis macrogoltabida" /mol_type="genomic DNA" /strain="203N" /isolation_source="activated sludge" /culture_collection="NBRC:111659" /db_xref="taxon:33050" /plasmid="unnamed1" /country="Japan: Kyoto" /collection_date="1974" protein /locus_tag="ATM17_31235" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_017499974.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology.; Start codon location was manually corrected by using GenomeMatcher" /transl_table=11 BEGIN 1 MKNLMSASVL AVAIASLSSP AFAQEAPAEE TGTTQDQVGL SDIIVTATKR SENLQDVPVA 61 VSAISSESLQ NKGVFETSDL NNTMPNLQVS SPYGQQQPNF SVRGVGVGTE FNANAASPVG 121 VYVDEVYQAF RSSHGQQLYD LNQIEVVRGP QGTLYGRNTT GGAVNFITKS PQLEGQEGYF 181 TAGYGNYNRI NLEGAIEVTP SPDKFGIRLA ATYVDADSYI ANRLPEGPST AAAGGASGLN 241 FNTGRSPGGT QSYGLRLSMR WKPVDTVDLK LKVYAAEAEG GTESPIPTGS SRTSDVISYT 301 NPNFLLGGLF SALAPAGLLP TSYSQSGRGL GINEVELDSV GVATSRARGV VFDARIDLTD 361 NLKLISVSGY DDGLYSQSST DCDGTPLRLC AIGYRSKFSA FNQDVRLDFD GGPFKAIVGA 421 FYGKDKVTGD NTPDFFNFLR DVRAAVGLPA SYFNPGGAFN GTALSAGSLP TGIYATQHFV 481 QKRTSYAAYG EASYELTPTL KFTAGLRYTK DKNRFLDGVT TYFDDTGTAR LITVSDFQQG 541 GAFAPYFLQD VRDEAGNVVI PSFQGLGIPL PGGLRNQGSA GRVTGRAIVD WKPVEDVMVY 601 ASYSRGYRSG TFNGLAYGSA NQVYFVKPEQ VDAFEGGIKS RFWDNRAQFN ISAFYYKYKG 661 QQGQVVDASA TANLISLDGT LKGLEVEAIV EPVNGFTLSA SFGLLDSSYK GGDCPADPST 721 IPNFPAQLGS CVVSSGGPVS VGGNPFPYAA KQSASFAADW DVIDDGDNKF TLHGDVNYTG 781 QFYFDSFKDY SRGPLPAVAS GKFGDGNGKY WVANARATYT MGNYSISVWG KNLTNKLYYP 841 FGISLENLFG TGYRVRAQPR TYGVEATLRF //