LOCUS       AMU92709.1               380 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis macrogoltabida carnitine dehydratase protein.
ACCESSION   CP013345-217
PROTEIN_ID  AMU92709.1
SOURCE      Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus)
  ORGANISM  Sphingopyxis macrogoltabida
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 421025)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N
            (NBRC 111659), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284142
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 421025)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 3.0
            Genome Coverage       :: 60x
            Sequencing Technology :: Illumina MiSeq and PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:58:19
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 5,691
            CDS                          :: 5,518
            Pseudo Genes                 :: 111
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 58
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis macrogoltabida"
                     /mol_type="genomic DNA"
                     /strain="203N"
                     /isolation_source="activated sludge"
                     /culture_collection="NBRC:111659"
                     /db_xref="taxon:33050"
                     /plasmid="unnamed1"
                     /country="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="ATM17_31110"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_015451985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MGPLAGCRVV EMAGIGPAPF CGMLLADLGA EVIRIDRTGK SGLGVDFPTR YDLLGRSKRS
       61 IAIDLQNPSG LGVARALIGR ADMLIEGFRP GVMERLGLGP ESFEAENPEL VYGRMTGWGQ
      121 DGPLAPSAGH DINYIAITGA LDAIGREGAP PTIPLNLVGD FGGGSLYLVI GLLAALTHAR
      181 ATGKGQVVDG AVVDGVNHLL TMQYAFAQMG AWGGGRGTNL IDGGAPFYDT YETADGRHVA
      241 IGPVEPKFFA ILIEKMGLAA ADLPSQNDRK AWPELRRRLA EAFRARTQAE WCERLEGSDA
      301 CFAPVLTLAE ARAHPHNRAR EAIVDVDDVA QPAPAPRFGG TPTGTPRAPV APGTDTDAIL
      361 RDWGVAESER DACRAAGAFG
//