LOCUS AMU92708.1 688 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis macrogoltabida ligand-gated channel protein. ACCESSION CP013345-215 PROTEIN_ID AMU92708.1 SOURCE Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus) ORGANISM Sphingopyxis macrogoltabida Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 421025) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284142 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 421025) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 3.0 Genome Coverage :: 60x Sequencing Technology :: Illumina MiSeq and PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:58:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 5,691 CDS :: 5,518 Pseudo Genes :: 111 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis macrogoltabida" /mol_type="genomic DNA" /strain="203N" /isolation_source="activated sludge" /culture_collection="NBRC:111659" /db_xref="taxon:33050" /plasmid="unnamed1" /country="Japan: Kyoto" /collection_date="1974" protein /locus_tag="ATM17_31100" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_011413168.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MVVTALKRSD NLQTVPVAIS AYGEEQLQAI NFRDIGSLSF TMPNVALDDN GTSKGYANFS 61 IRGIGVNSSI PSIDPTVGLF VDGVYQGINA GQVFDNFDLE AVEVLRGPQG VLFGRNVTGG 121 AILVRSRKPT DEFDMRGRIA VETGLRVVAD ASVSGPIIEG KLQAKIAAYY SYDNGWFTNL 181 FDNSEFGKDR QFIVRPMLRF TPSDNVEVLL RYEHGEANGD GPATQNHALY SRDSHDFLVN 241 DRGFFHNKWD SLTGEINVDV GFGDEGTITN IAGWRRFKGD TLSDLDGVNT VQFNIGTFTD 301 QEQFSNELRY AGTFGRLKPT IGVYYFTQDL TYLEDRTLAG GAVRRAGGGI GTFQTFGAFG 361 AVDWEFIDTL TLNLGLRYTW EKKEVEIATV RAGGANYPAR TIVADFLSEK SWNDLSPKIG 421 LQWQPSNRTQ VYGYFAKGFR SGGYNFRNTL LGAPPGPFDS ESQDAYEFGV KQRIPGGRIS 481 LAAFQNTIKN IQREVQVPVV GVGIAQLIQN VGTARVRGFE GEVQFSPVDN FVLSGQVGYT 541 DGKYTSLLVD LNGDGVINAT DFSLKLPRQS PWTYGASATL DIPMSSGVVS ARVSFNHRDP 601 AFHTDNNLGF YKAVDLLDAN LSYTLDDGSV TFSIYGKNLT NETTYGNDAV LPDTAAFGGD 661 GPAGPRPLPT FSPLGRGRVI GGEIRFNF //