LOCUS AMU92629.1 780 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis macrogoltabida TonB-dependent receptor protein. ACCESSION CP013345-135 PROTEIN_ID AMU92629.1 SOURCE Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus) ORGANISM Sphingopyxis macrogoltabida Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 421025) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284142 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 421025) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 3.0 Genome Coverage :: 60x Sequencing Technology :: Illumina MiSeq and PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:58:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 5,691 CDS :: 5,518 Pseudo Genes :: 111 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis macrogoltabida" /mol_type="genomic DNA" /strain="203N" /isolation_source="activated sludge" /culture_collection="NBRC:111659" /db_xref="taxon:33050" /plasmid="unnamed1" /country="Japan: Kyoto" /collection_date="1974" protein /locus_tag="ATM17_30700" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_017672447.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MNRNLLTARW ASGVLLVATI IQPAMAQDGP QEGQGAAVES AGDIVVTARR RAENLLDVPV 61 AVTAYSGSEL EARGAIDITD IAATTPNVTL ENSRGTNSTL TAFIRGTGQQ DPVSGFEGGV 121 GIYIDDVYLN RPQAAILDIY DVERIEVLRG PQGTLYGRNS IGGAVKYVTR RLPDQFELKL 181 RAAYGSYDQA DGIVTVSAPI GNQLRVGGSV ARLSRGGFGH NLTNGLENYN KDIWAGRGTV 241 EFASPDDHML IRISGDYTRD KSDPRNGHRV IPGVFSGTPV LSDVYDTRAG ANNPRQNLTA 301 YGLTMTASAE LTDAVTIRSI SAWRKDSSTS PIDFDALPAI DADGPIAYRN EQVSQEFQLL 361 YDTSRLHGLI GFYYLDADSE TFLDLLVFTT LPNLNSATES LAKTRTWSVF GDFTFDLSDQ 421 FALSLGGRYT SDHRVGQNLR QNRLGTSAIF GGNPIVLSTS SNFRGERTFR KFTPRASLTY 481 KPTPDHTLYV SYAKGFKGGG FDPRGASTAA RDFNDNGVVD AEDVFEFMSF DPETVDSYEV 541 GWKASLFDRR MRFALAGFYA DYKDVQIPGA VGFDSDGDGS NETFIGITTN AAQARFKGLE 601 FETSALLARD FAGSGSAVNV SGSLGYIDAK FLRFIDARGV DVAELRRFQN TPKWTLSGQL 661 GIDLPVASGM LHGSTTVSYR SKTTQLETPS PLLDQPKYGL LDASLVWSSK NDRYSIGLHA 721 KNITDKRYIT SGYQILFTAP DGTPLRDAQG RLRPQVGREG VATAFYGNPR QILVTFGAKF //