LOCUS ALR16207.1 670 aa PRT BCT 02-SEP-2016 DEFINITION Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 NAD- dependent DNA ligase LigA protein. ACCESSION CP009977-1817 PROTEIN_ID ALR16207.1 SOURCE Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 ORGANISM Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 3248023) AUTHORS Lee,H. and Church,G.M. TITLE Vibrio natriegens genome v1.0 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3248023) AUTHORS Lee,H. and Church,G.M. TITLE Direct Submission JOURNAL Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue Louis Pasteur, NRB 233, Boston, MA 02115, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: RS HGAP v. 3 Assembly Name :: Vnat1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 96.48x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/24/2014 10:39:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.9 (rev. 452286) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 4,665 CDS :: 4,459 Pseudo Genes :: 42 rRNAs :: 34 (5S, 16S, 23S) tRNAs :: 129 ncRNA :: 1 Frameshifted Genes :: 10 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759" /mol_type="genomic DNA" /strain="ATCC 14048" /isolation_source="salt marsh mud" /culture_collection="ATCC:14048" /type_material="type strain of Vibrio natriegens" /db_xref="taxon:1219067" /chromosome="1" /country="USA" /collection_date="27-Feb-2012" protein /gene="ligA" /locus_tag="PN96_09495" /EC_number="6.5.1.2" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_014231107.1" /note="this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSESVLQRLE ELKESLHYHA VRYYVEDNPE IPDAEYDRLM RELLDIEAQH PDLVTVDSPS 61 QRVGGKPLSE FSEVQHEVPM LSLDNAFDDS ELDSFHKRAQ DRVGNQSVKQ YCCEPKLDGL 121 AVSLLYENGV LVQAATRGDG TTGENITENV RTINAIPLKL RGNDWPERLE VRGEVFMPKA 181 GFEKLNELAR QKGDKVFVNP RNAAAGSLRQ LDSRVTASRP LSFYAYSVGV VQGAELASSH 241 YERFLQIKSW GLPMCPETKR VDSLADVKAY YQDILQRRDA LPYEIDGVVI KIDDIAIQER 301 LGFVARAPRW AIAYKFPAQE EITTLNDVEF QVGRTGAITP VAKLEPVFVG GVTVSNATLH 361 NADEIERLQV KIGDQVVIRR AGDVIPQVVS VIRERRPENA REIVFPSLCP VCDSHVERIE 421 GEAVTRCTGG LVCQAQRKQA LKHFVSRKAL DVDGLGDKVI EQLVDREMVE TPADLFKLSA 481 GILTVLERMG PKSAQNIVNA LDKSKLTTLP RFLYSLGIRE VGEATAANLA QHFKTLEAIQ 541 VATEEQLIEV QDIGVIVAKH ITTFFGEEQN QAVVKDLLEQ GIHWPEISAP EQGVELPLEG 601 KTVVLTGTLS QLGRSEAKEA LQALGAKVTG SVSKKTDILF AGENAGSKLA KAQDLGIEIK 661 TEQDLLDLMN //