LOCUS       ALR16207.1               670 aa    PRT              BCT 02-SEP-2016
DEFINITION  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 NAD-
            dependent DNA ligase LigA protein.
ACCESSION   CP009977-1817
PROTEIN_ID  ALR16207.1
SOURCE      Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
  ORGANISM  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Vibrio natriegens genome v1.0
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue
            Louis Pasteur, NRB 233, Boston, MA 02115, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: RS HGAP v. 3
            Assembly Name          :: Vnat1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.48x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/24/2014 10:39:19
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.9 (rev. 452286)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 4,665
            CDS                          :: 4,459
            Pseudo Genes                 :: 42
            rRNAs                        :: 34 (5S, 16S, 23S)
            tRNAs                        :: 129
            ncRNA                        :: 1
            Frameshifted Genes           :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM
                     759"
                     /mol_type="genomic DNA"
                     /strain="ATCC 14048"
                     /isolation_source="salt marsh mud"
                     /culture_collection="ATCC:14048"
                     /type_material="type strain of Vibrio natriegens"
                     /db_xref="taxon:1219067"
                     /chromosome="1"
                     /country="USA"
                     /collection_date="27-Feb-2012"
     protein         /gene="ligA"
                     /locus_tag="PN96_09495"
                     /EC_number="6.5.1.2"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_014231107.1"
                     /note="this protein catalyzes the formation of
                     phosphodiester linkages between 5'-phosphoryl and
                     3'-hydroxyl groups in double-stranded DNA using NAD as a
                     coenzyme and as the energy source for the reaction;
                     essential for DNA replication and repair of damaged DNA;
                     similar to ligase LigB; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSESVLQRLE ELKESLHYHA VRYYVEDNPE IPDAEYDRLM RELLDIEAQH PDLVTVDSPS
       61 QRVGGKPLSE FSEVQHEVPM LSLDNAFDDS ELDSFHKRAQ DRVGNQSVKQ YCCEPKLDGL
      121 AVSLLYENGV LVQAATRGDG TTGENITENV RTINAIPLKL RGNDWPERLE VRGEVFMPKA
      181 GFEKLNELAR QKGDKVFVNP RNAAAGSLRQ LDSRVTASRP LSFYAYSVGV VQGAELASSH
      241 YERFLQIKSW GLPMCPETKR VDSLADVKAY YQDILQRRDA LPYEIDGVVI KIDDIAIQER
      301 LGFVARAPRW AIAYKFPAQE EITTLNDVEF QVGRTGAITP VAKLEPVFVG GVTVSNATLH
      361 NADEIERLQV KIGDQVVIRR AGDVIPQVVS VIRERRPENA REIVFPSLCP VCDSHVERIE
      421 GEAVTRCTGG LVCQAQRKQA LKHFVSRKAL DVDGLGDKVI EQLVDREMVE TPADLFKLSA
      481 GILTVLERMG PKSAQNIVNA LDKSKLTTLP RFLYSLGIRE VGEATAANLA QHFKTLEAIQ
      541 VATEEQLIEV QDIGVIVAKH ITTFFGEEQN QAVVKDLLEQ GIHWPEISAP EQGVELPLEG
      601 KTVVLTGTLS QLGRSEAKEA LQALGAKVTG SVSKKTDILF AGENAGSKLA KAQDLGIEIK
      661 TEQDLLDLMN
//