LOCUS       ALR14870.1              1159 aa    PRT              BCT 02-SEP-2016
DEFINITION  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 DNA
            polymerase III subunit alpha protein.
ACCESSION   CP009977-411
PROTEIN_ID  ALR14870.1
SOURCE      Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
  ORGANISM  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Vibrio natriegens genome v1.0
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue
            Louis Pasteur, NRB 233, Boston, MA 02115, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: RS HGAP v. 3
            Assembly Name          :: Vnat1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.48x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/24/2014 10:39:19
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.9 (rev. 452286)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 4,665
            CDS                          :: 4,459
            Pseudo Genes                 :: 42
            rRNAs                        :: 34 (5S, 16S, 23S)
            tRNAs                        :: 129
            ncRNA                        :: 1
            Frameshifted Genes           :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM
                     759"
                     /mol_type="genomic DNA"
                     /strain="ATCC 14048"
                     /isolation_source="salt marsh mud"
                     /culture_collection="ATCC:14048"
                     /type_material="type strain of Vibrio natriegens"
                     /db_xref="taxon:1219067"
                     /chromosome="1"
                     /country="USA"
                     /collection_date="27-Feb-2012"
     protein         /gene="dnaE"
                     /locus_tag="PN96_02335"
                     /EC_number="2.7.7.7"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_017047313.1"
                     /note="catalyzes DNA-template-directed extension of the
                     3'- end of a DNA strand by one nucleotide at a time; main
                     replicative polymerase; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSDPKFIHLR VHSDFSMVDG ISKVPPIVKK VAELGMPAMA LTDFTNLCGL VKFYGTAHGC
       61 GVKPIIGADF KMQSDEFGEE LTQLTVLAAD NVGYKNLTLL ISKAYLRGHI QHQPVIDKSW
      121 LAEMSEGLIV LSGGKNGDIG KALLKGNRNL VQSCVEFYKQ HFPDRYYLEL LRTGRPDEET
      181 YLHFAVELAE QVDLPVVATN EVVFLSSDLF DAHEIRVAIH DGYTLEDPRR PKNYSPQQYL
      241 RSEEEMCELF ADIPEALENS VEIAKRCNVT VRLGEYFLPA FPTEGMKETE FLVMKSREGL
      301 EERLEFLFPD EEERKKRRPE YDERLQIELD VINQMGFPGY FLIVMEFIQW SKDNDIPVGP
      361 GRGSGAGSLV AYALKITDLD PLEYDLLFER FLNPERVSMP DFDVDFCMDK RDQVIDHVAE
      421 MYGRDAVSQI ITFGTMAAKA VIRDVGRVLG HPFGFVDRIS KLIPPDPGMT LDKAFKAEPA
      481 LPELYEADEE VKELIDMCHI LEGCTRNAGK HAGGVVISPT TITDFAPIYA DSEGHFPVTQ
      541 FDKNDVETAG LVKFDFLGLR TLTIIDWALG LINPRLEREG KAPVRIESIP LDDQASFRLL
      601 QNSETTAVFQ LESRGMKELI KRLQPDCFED IIALVALFRP GPLQSGMVDN FIDRKHGREA
      661 ISYPDEKWQH ESLKEILDPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM
      721 AKQRATFEEG AVKNGVDGEL AMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKMHYPA
      781 EFMAAVMTAD MDNTEKVVGL VDECFRMKLT VLPPDINSGL YRFNVDENGA IVYGIGAIKG
      841 VGEGPIDAIL EARNKGGHFK DLFDFCARID LKRVNKRVIE KLIYAGALDR LGPHRAAMMA
      901 SLNDAVKAAS QHHQAEAFGQ ADMFGVLTDA PEEVEHKYTQ VPPWPEKVWL EGERETLGLY
      961 LTGHPINAYL KELNKYTSCR LKDATPTRRD QSVTVAGLVI AARVMTTKRG TRIGIMTLDD
     1021 RSGRMEVMLF SDALDRYAEL LEKDRILVVS GQVSFDDFNG GLKMSAREVM DLGSAREKYA
     1081 RGLSVSIDAN QINDQFFEQF SRILEPHKAG TVPVNVYYQR ADARARLTLG TEWRVTPSDT
     1141 LIDDLKQLLG TNQVELEFN
//