LOCUS       ALR14806.1              1163 aa    PRT              BCT 02-SEP-2016
DEFINITION  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 exonuclease
            V subunit gamma protein.
ACCESSION   CP009977-345
PROTEIN_ID  ALR14806.1
SOURCE      Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
  ORGANISM  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Vibrio natriegens genome v1.0
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue
            Louis Pasteur, NRB 233, Boston, MA 02115, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: RS HGAP v. 3
            Assembly Name          :: Vnat1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.48x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/24/2014 10:39:19
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.9 (rev. 452286)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 4,665
            CDS                          :: 4,459
            Pseudo Genes                 :: 42
            rRNAs                        :: 34 (5S, 16S, 23S)
            tRNAs                        :: 129
            ncRNA                        :: 1
            Frameshifted Genes           :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM
                     759"
                     /mol_type="genomic DNA"
                     /strain="ATCC 14048"
                     /isolation_source="salt marsh mud"
                     /culture_collection="ATCC:14048"
                     /type_material="type strain of Vibrio natriegens"
                     /db_xref="taxon:1219067"
                     /chromosome="1"
                     /country="USA"
                     /collection_date="27-Feb-2012"
     protein         /gene="recC"
                     /locus_tag="PN96_02005"
                     /EC_number="3.1.11.5"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_014232816.1"
                     /note="catalyzes ATP-dependent exonucleolytic cleavage in
                     either 5'- to 3'- or 3'- to 5'-direction to yield
                     5'-phosphooligonucleotides; component of the RecBCD (Exo
                     V) helicase/nuclease complex that is essential for
                     recombination; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MFTVYHSNQV DVLKSLLVEL IRISPLENPF EKEQILVQSP GMSQWLKMEL AKEFGVAANI
       61 DFPLPATFIW EMFTQVLPDV PKRSAFNKEA MTWKLMHLLP GLLNQETFSP LAQYLKDDSD
      121 NSKLYQLAEK IADIFDGYLV YRPEWIASWE AGQSVPELED EHPWQPILWQ ALYDHTVSLG
      181 QSPYHRANLY EHFIDTLENF NGNFDHLPKR LFVFGISSLP PRYMDALKAI GEHIDVHLMF
      241 TNPCRYYWGE VRDRKYLARL AAKHRQHVVW QDDHSEVQGE TEQLKGSVED NVLDELHTDV
      301 VGNSLLASMG KLGRDNMYLL SQLESHEIEA FVDVERDSLL HQLQGDILNL EEHQDDQQIE
      361 HSGHKQVVSL GDKSLSLHAC HSPMREVEVL HDQLLAMFDA DPSLKPRDII VMVADINAYS
      421 PAIQAVFGNA PGERFIPYSI SDRTADQESP ILAAFMQLVN LPNTRCLASE LLELLETPAI
      481 LKRFELSEDD FLQAKQWVEA SGIRWGLDAN TGREFELPET RQNTWQFGIQ RMLLGYAMPE
      541 SAGLFETEQG SLSPYNEVQG MGAELAGKLA HFIQQVSTYR RKISHVQTID GWRETLVTLL
      601 DDFFSVELEG EMALKSIRDT LSQLKEQLAD AAFEEVLSPA IIRQYLQDKL SGTRVSQRFL
      661 AGQVNFCTLM PMRSIPFRTV CLLGMNDGVY PRSMPPEGFD LMTGRTKPGD RSRRDDDRYL
      721 FLEAMLSAQQ TLYISYVGRS IQDNTERVPS VLVSELMEYC HQNYCLGGDE GLPVDESGDN
      781 LLKALVNTHA MVPFSPSAFQ GIHSSYAKEW VPAALTQSSQ SQGYVRHDFN RALDDYLLGA
      841 TFPLELDLVE LQRFWRLPVQ YFFNRRLKVV FEPPLPVMED DEPFVLGGLE SYQMRDELLE
      901 TLLETTLTQP EKKTDVLKHF MSQQRAQGKL PVGAFGDIEF ETNRVQAEEL VDKLAFLSGA
      961 PQDDLEIDLT FDSLFEGNEG DEKKVRLTGW LTQCYQSGLI RYRSGRVRSQ DYLAAWIDHL
     1021 AMSASGHAKK THIIGYDRKE GAVHLIYPEI ADAQYAKQLL TELVRLFFEG MTKPLPYFPQ
     1081 TALACVEAGF SRGHWADDEE KSLKKMADTF NDGYMSSGEG NNAYIARIWP AWNDDLAKEV
     1141 RLLTALVLQG ARLAVQDADD IKA
//