LOCUS ALR14637.1 439 aa PRT BCT 02-SEP-2016 DEFINITION Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 23S rRNA methyltransferase protein. ACCESSION CP009977-167 PROTEIN_ID ALR14637.1 SOURCE Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 ORGANISM Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 3248023) AUTHORS Lee,H. and Church,G.M. TITLE Vibrio natriegens genome v1.0 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3248023) AUTHORS Lee,H. and Church,G.M. TITLE Direct Submission JOURNAL Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue Louis Pasteur, NRB 233, Boston, MA 02115, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: RS HGAP v. 3 Assembly Name :: Vnat1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 96.48x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/24/2014 10:39:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.9 (rev. 452286) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 4,665 CDS :: 4,459 Pseudo Genes :: 42 rRNAs :: 34 (5S, 16S, 23S) tRNAs :: 129 ncRNA :: 1 Frameshifted Genes :: 10 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759" /mol_type="genomic DNA" /strain="ATCC 14048" /isolation_source="salt marsh mud" /culture_collection="ATCC:14048" /type_material="type strain of Vibrio natriegens" /db_xref="taxon:1219067" /chromosome="1" /country="USA" /collection_date="27-Feb-2012" protein /gene="rumA" /locus_tag="PN96_01055" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_017189117.1" /note="in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MARIFQPKKK TQLNTRHQQV HVERLDHHGA GIAYLKKKPL FIDGALPGEE VVTQLVEEKS 61 KFARGKLIKI LQSSDTRAEP FCPHYHECGG CDLQHLEYDQ QLTHKQQTLR QLMRKFAGSD 121 IELDAPVLGE QLGYRRRARV SLFVDKKTRQ LHFGFRKKQS KQIAQVTDCP VLAPQLNVLL 181 PEIYAELKQF KKPDQLGHVE LVLGDNGPCI TLRHMSNLTE PEVEALVKLA ERHNATLYLM 241 PQTDQLDLIS GEIPFYQENG VKVPFTPNNF IQVNQAVNQK MVAQAIQWLD PQDSDRVLDL 301 FCGLGNFSLP IAKLAKHVVG IEGVAEMVEK ATNNASLNQI NNAQFYHANL EQDFDGQVWA 361 AEKFDKVLLD PARAGASGII DQVSALGAQR VVYVSCNPAT LARDSQSLIE QGYKLTKLGM 421 LDMFPHTSHL ESMALFEKS //