LOCUS       ALR14637.1               439 aa    PRT              BCT 02-SEP-2016
DEFINITION  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 23S
            rRNA methyltransferase protein.
ACCESSION   CP009977-167
PROTEIN_ID  ALR14637.1
SOURCE      Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
  ORGANISM  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Vibrio natriegens genome v1.0
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue
            Louis Pasteur, NRB 233, Boston, MA 02115, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: RS HGAP v. 3
            Assembly Name          :: Vnat1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.48x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/24/2014 10:39:19
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.9 (rev. 452286)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 4,665
            CDS                          :: 4,459
            Pseudo Genes                 :: 42
            rRNAs                        :: 34 (5S, 16S, 23S)
            tRNAs                        :: 129
            ncRNA                        :: 1
            Frameshifted Genes           :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM
                     759"
                     /mol_type="genomic DNA"
                     /strain="ATCC 14048"
                     /isolation_source="salt marsh mud"
                     /culture_collection="ATCC:14048"
                     /type_material="type strain of Vibrio natriegens"
                     /db_xref="taxon:1219067"
                     /chromosome="1"
                     /country="USA"
                     /collection_date="27-Feb-2012"
     protein         /gene="rumA"
                     /locus_tag="PN96_01055"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_017189117.1"
                     /note="in Escherichia coli this enzyme catalyzes the
                     SAM-dependent methylation of U1939 in the 23S ribomal RNA;
                     binds an iron-sulfur cluster [4Fe-4S]; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MARIFQPKKK TQLNTRHQQV HVERLDHHGA GIAYLKKKPL FIDGALPGEE VVTQLVEEKS
       61 KFARGKLIKI LQSSDTRAEP FCPHYHECGG CDLQHLEYDQ QLTHKQQTLR QLMRKFAGSD
      121 IELDAPVLGE QLGYRRRARV SLFVDKKTRQ LHFGFRKKQS KQIAQVTDCP VLAPQLNVLL
      181 PEIYAELKQF KKPDQLGHVE LVLGDNGPCI TLRHMSNLTE PEVEALVKLA ERHNATLYLM
      241 PQTDQLDLIS GEIPFYQENG VKVPFTPNNF IQVNQAVNQK MVAQAIQWLD PQDSDRVLDL
      301 FCGLGNFSLP IAKLAKHVVG IEGVAEMVEK ATNNASLNQI NNAQFYHANL EQDFDGQVWA
      361 AEKFDKVLLD PARAGASGII DQVSALGAQR VVYVSCNPAT LARDSQSLIE QGYKLTKLGM
      421 LDMFPHTSHL ESMALFEKS
//