LOCUS ALR14625.1 192 aa PRT BCT 02-SEP-2016 DEFINITION Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 RNA polymerase sigma factor RpoE protein. ACCESSION CP009977-155 PROTEIN_ID ALR14625.1 SOURCE Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 ORGANISM Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 3248023) AUTHORS Lee,H. and Church,G.M. TITLE Vibrio natriegens genome v1.0 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3248023) AUTHORS Lee,H. and Church,G.M. TITLE Direct Submission JOURNAL Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue Louis Pasteur, NRB 233, Boston, MA 02115, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: RS HGAP v. 3 Assembly Name :: Vnat1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 96.48x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/24/2014 10:39:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.9 (rev. 452286) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 4,665 CDS :: 4,459 Pseudo Genes :: 42 rRNAs :: 34 (5S, 16S, 23S) tRNAs :: 129 ncRNA :: 1 Frameshifted Genes :: 10 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759" /mol_type="genomic DNA" /strain="ATCC 14048" /isolation_source="salt marsh mud" /culture_collection="ATCC:14048" /type_material="type strain of Vibrio natriegens" /db_xref="taxon:1219067" /chromosome="1" /country="USA" /collection_date="27-Feb-2012" protein /locus_tag="PN96_00995" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_005593048.1" /note="Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MNEQLTDQVL IERVQNGDKQ AFNLLVTKYQ NKVCNLISRY VSNPGDVPDV AQEAFIKAYR 61 AIPSFRGESA FYTWLYRIAV NTAKNHIVAQ GRRPPATDVD AEDAEFYETG SALKEISNPE 121 NLTLSKELQR VVFSAIEALP EDLKTAMTLR ELDGLSYEEI AEVMDCPVGT VRSRIFRARE 181 AVEKKIKPLL QR //