LOCUS       ALR14488.1              1400 aa    PRT              BCT 02-SEP-2016
DEFINITION  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 DNA-
            directed RNA polymerase subunit beta' protein.
ACCESSION   CP009977-14
PROTEIN_ID  ALR14488.1
SOURCE      Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
  ORGANISM  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Vibrio natriegens genome v1.0
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3248023)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue
            Louis Pasteur, NRB 233, Boston, MA 02115, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: RS HGAP v. 3
            Assembly Name          :: Vnat1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.48x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/24/2014 10:39:19
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.9 (rev. 452286)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 4,665
            CDS                          :: 4,459
            Pseudo Genes                 :: 42
            rRNAs                        :: 34 (5S, 16S, 23S)
            tRNAs                        :: 129
            ncRNA                        :: 1
            Frameshifted Genes           :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM
                     759"
                     /mol_type="genomic DNA"
                     /strain="ATCC 14048"
                     /isolation_source="salt marsh mud"
                     /culture_collection="ATCC:14048"
                     /type_material="type strain of Vibrio natriegens"
                     /db_xref="taxon:1219067"
                     /chromosome="1"
                     /country="USA"
                     /collection_date="27-Feb-2012"
     protein         /locus_tag="PN96_00125"
                     /EC_number="2.7.7.6"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_010444398.1"
                     /note="DNA-dependent RNA polymerase catalyzes the
                     transcription of DNA into RNA using the four
                     ribonucleoside triphosphates as substrates. Subunit beta'
                     binds to sigma factor allowing it to bind to the -10
                     region of the promoter; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKDLLNFLKA QHKTEEFDAI KIGLSSPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
       61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRD RMGHIELASP VAHIWFLKSL
      121 PSRIGLLMDI PLRDIERVLY FEMYVVTEPG MTDLEKSQML TEEEYLDRLE EWGDEFTAKM
      181 GAEAIKDLLG SMDMHAEAEQ MREELETTNS ETKRKKVTKR LKLVEAFIQS GNNPEWMILT
      241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELAAPDI IVRNEKRMLQ
      301 ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
      361 LRLHQCGLPK KMALELFKPF IYSKLETRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
      421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
      481 RTLMMSTNNI LSPASGDPII VPSQDVVLGL YYMTREKINV KGEGMYLSGP AEAEKAYRTK
      541 QAELHARVKV RITETVVDED GNSTTSTGMV DTTIGRAMLW QIVPAGLPYS IVNQKLGKKQ
      601 ISNLLNEAYR KLGLKDTVIF ADQIMYAGFA YAALSGVSVG IDDMVVPPAK YTEIAEAEEE
      661 VREIQEQYQS GLVTAGERYN KVIDIWASTN DRVAKAMMEN LSSETVVNRD GEEEQQESFN
      721 SIYMMADSGA RGSAAQIRQL AGMRGLMARP DGSIIETPIT ANFKEGLNVL QYFISTHGAR
      781 KGLADTALKT ANSGYLTRRL VDVAQDVVVT EHDCGTHEGV DMMPHIEGGD VKVALSELAL
      841 GRVVAEDVLK PGTEDVLIPR NTLIDEKWCQ IMEENSVDSM KVRSVVTCDS DFGCCAQCYG
      901 RDLARGHLVN QGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASTAAAENSV QAKNNGSIKL
      961 HNAKSVVADD GKIVITSRAT ELTIIDEFGR TKEKHKLPYG TLLSKGDGDT VQAGETVANW
     1021 EAHTLPIITE VAGRIQFVDM IDGVTVSRQT DDLTGLSSSE VTDAAARPSA GKDMRPAIKL
     1081 VDEQGNDVMI PGTDMPAHYF LPGKAIVNIE DGAAVGVGAT LARIPQKSGG NKDITGGLPR
     1141 VADLFEARKP KEPAILAEHT GTVSFGKETK GKRRLVITRD SGEAYEEMIP KHRQLNVFEG
     1201 EKVERGDVIA DGPESPHDIL RLRGVHAVTQ YIANEVQEVY RLQGVKINDK HIETIVRQML
     1261 RKCTITFAGD SEFLPGEQVE YSQVKIANRN LEAEGKEPAR FERELLGITK ASLATESFIS
     1321 AASFQETTRV LTEAAVSGKR DDLRGLKENV IVGRLIPAGT GFAYHQERQA KRTEAQEGPS
     1381 AEQATDNLAA LLNAGFSSEE
//