LOCUS ALR14488.1 1400 aa PRT BCT 02-SEP-2016 DEFINITION Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 DNA- directed RNA polymerase subunit beta' protein. ACCESSION CP009977-14 PROTEIN_ID ALR14488.1 SOURCE Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 ORGANISM Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 3248023) AUTHORS Lee,H. and Church,G.M. TITLE Vibrio natriegens genome v1.0 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3248023) AUTHORS Lee,H. and Church,G.M. TITLE Direct Submission JOURNAL Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue Louis Pasteur, NRB 233, Boston, MA 02115, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: RS HGAP v. 3 Assembly Name :: Vnat1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 96.48x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/24/2014 10:39:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.9 (rev. 452286) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 4,665 CDS :: 4,459 Pseudo Genes :: 42 rRNAs :: 34 (5S, 16S, 23S) tRNAs :: 129 ncRNA :: 1 Frameshifted Genes :: 10 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759" /mol_type="genomic DNA" /strain="ATCC 14048" /isolation_source="salt marsh mud" /culture_collection="ATCC:14048" /type_material="type strain of Vibrio natriegens" /db_xref="taxon:1219067" /chromosome="1" /country="USA" /collection_date="27-Feb-2012" protein /locus_tag="PN96_00125" /EC_number="2.7.7.6" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_010444398.1" /note="DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKDLLNFLKA QHKTEEFDAI KIGLSSPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR 61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRD RMGHIELASP VAHIWFLKSL 121 PSRIGLLMDI PLRDIERVLY FEMYVVTEPG MTDLEKSQML TEEEYLDRLE EWGDEFTAKM 181 GAEAIKDLLG SMDMHAEAEQ MREELETTNS ETKRKKVTKR LKLVEAFIQS GNNPEWMILT 241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELAAPDI IVRNEKRMLQ 301 ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY 361 LRLHQCGLPK KMALELFKPF IYSKLETRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP 421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA 481 RTLMMSTNNI LSPASGDPII VPSQDVVLGL YYMTREKINV KGEGMYLSGP AEAEKAYRTK 541 QAELHARVKV RITETVVDED GNSTTSTGMV DTTIGRAMLW QIVPAGLPYS IVNQKLGKKQ 601 ISNLLNEAYR KLGLKDTVIF ADQIMYAGFA YAALSGVSVG IDDMVVPPAK YTEIAEAEEE 661 VREIQEQYQS GLVTAGERYN KVIDIWASTN DRVAKAMMEN LSSETVVNRD GEEEQQESFN 721 SIYMMADSGA RGSAAQIRQL AGMRGLMARP DGSIIETPIT ANFKEGLNVL QYFISTHGAR 781 KGLADTALKT ANSGYLTRRL VDVAQDVVVT EHDCGTHEGV DMMPHIEGGD VKVALSELAL 841 GRVVAEDVLK PGTEDVLIPR NTLIDEKWCQ IMEENSVDSM KVRSVVTCDS DFGCCAQCYG 901 RDLARGHLVN QGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASTAAAENSV QAKNNGSIKL 961 HNAKSVVADD GKIVITSRAT ELTIIDEFGR TKEKHKLPYG TLLSKGDGDT VQAGETVANW 1021 EAHTLPIITE VAGRIQFVDM IDGVTVSRQT DDLTGLSSSE VTDAAARPSA GKDMRPAIKL 1081 VDEQGNDVMI PGTDMPAHYF LPGKAIVNIE DGAAVGVGAT LARIPQKSGG NKDITGGLPR 1141 VADLFEARKP KEPAILAEHT GTVSFGKETK GKRRLVITRD SGEAYEEMIP KHRQLNVFEG 1201 EKVERGDVIA DGPESPHDIL RLRGVHAVTQ YIANEVQEVY RLQGVKINDK HIETIVRQML 1261 RKCTITFAGD SEFLPGEQVE YSQVKIANRN LEAEGKEPAR FERELLGITK ASLATESFIS 1321 AASFQETTRV LTEAAVSGKR DDLRGLKENV IVGRLIPAGT GFAYHQERQA KRTEAQEGPS 1381 AEQATDNLAA LLNAGFSSEE //