LOCUS AKO88590.1 480 aa PRT BCT 27-AUG-2015
DEFINITION Pseudomonas aeruginosa DSM 50071 = NBRC 12689 UDP-N-acetylmuramate-
-alanine ligase protein.
ACCESSION CP012001-4525
PROTEIN_ID AKO88590.1
SOURCE Pseudomonas aeruginosa DSM 50071 = NBRC 12689
ORGANISM Pseudomonas aeruginosa DSM 50071 = NBRC 12689
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE First Complete Genome Sequence of Pseudomonas aeruginosa (Schroeter
1872) Migula 1900 (DSM 50071T), Determined Using PacBio
Single-Molecule Real-Time Technology
JOURNAL Genome Announc 3 (4), e00932-15 (2015)
PUBMED 26294631
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2015) Research and Development Division, Okinawa
Institute of Advanced Sciences, Okinawa Biotechnology Business
Support Center, Suite109, 5-1, Suzaki, Uruma, Okinawa 904-2234,
Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP3 v. 2.3.0
Genome Coverage :: 843x
Sequencing Technology :: PacBio
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/02/2015 10:33:57
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 2.10
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 5,805
CDS :: 5,710
Pseudo Genes :: 18
CRISPR Arrays :: 3
rRNAs :: 12 (5S, 16S, 23S)
tRNAs :: 64
ncRNA :: 1
Frameshifted Genes :: 11
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa DSM 50071 = NBRC 12689"
/mol_type="genomic DNA"
/strain="DSM 50071"
/culture_collection="DSM:50071"
/type_material="type strain of Pseudomonas aeruginosa"
/db_xref="taxon:1123015"
protein /gene="murC"
/locus_tag="PA50071_22960"
/EC_number="6.3.2.8"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_004348013.1"
/note="Catalyzes the formation of
UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate
and L-alanine in peptidoglycan synthesis; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/transl_table=11
BEGIN
1 MVKEPNGVTR TMRRIRRIHF VGIGGAGMCG IAEVLLNLGY EVSGSDLKAS AVTERLEKFG
61 AQIFIGHQAE NADGADVLVV SSAINRANPE VASALERRIP VVPRAEMLAE LMRYRHGIAV
121 AGTHGKTTTT SLIASVFAAG GLDPTFVIGG RLNAAGTNAQ LGASRYLVAE ADESDASFLH
181 LQPMVAVVTN IDADHMATYG GDFNKLKKTF VEFLHNLPFY GLAVMCVDDP VVREILPQIA
241 RPTVTYGLSE DADVRAINIR QEGMRTWFTV LRPEREPLDV SVNMPGLHNV LNSLATIVIA
301 TDEGISDEAI VQGLSGFQGV GRRFQVYGEL QVEGGSVMLV DDYGHHPREV AAVIKAIRGG
361 WPERRLVMVY QPHRYTRTRD LYEDFVQVLG EANVLLLMEV YPAGEEPIPG ADSRQLCHSI
421 RQRGQLDPIY FERDADLAPL VKPLLRAGDI LLCQGAGDVG GLAPQLIKNP LFAGKGGRGA
//