LOCUS AKO86072.1 715 aa PRT BCT 27-AUG-2015
DEFINITION Pseudomonas aeruginosa DSM 50071 = NBRC 12689 multifunctional
fatty acid oxidation complex subunit alpha protein.
ACCESSION CP012001-1919
PROTEIN_ID AKO86072.1
SOURCE Pseudomonas aeruginosa DSM 50071 = NBRC 12689
ORGANISM Pseudomonas aeruginosa DSM 50071 = NBRC 12689
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE First Complete Genome Sequence of Pseudomonas aeruginosa (Schroeter
1872) Migula 1900 (DSM 50071T), Determined Using PacBio
Single-Molecule Real-Time Technology
JOURNAL Genome Announc 3 (4), e00932-15 (2015)
PUBMED 26294631
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2015) Research and Development Division, Okinawa
Institute of Advanced Sciences, Okinawa Biotechnology Business
Support Center, Suite109, 5-1, Suzaki, Uruma, Okinawa 904-2234,
Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP3 v. 2.3.0
Genome Coverage :: 843x
Sequencing Technology :: PacBio
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/02/2015 10:33:57
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 2.10
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 5,805
CDS :: 5,710
Pseudo Genes :: 18
CRISPR Arrays :: 3
rRNAs :: 12 (5S, 16S, 23S)
tRNAs :: 64
ncRNA :: 1
Frameshifted Genes :: 11
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa DSM 50071 = NBRC 12689"
/mol_type="genomic DNA"
/strain="DSM 50071"
/culture_collection="DSM:50071"
/type_material="type strain of Pseudomonas aeruginosa"
/db_xref="taxon:1123015"
protein /gene="fadB"
/locus_tag="PA50071_09750"
/EC_number="1.1.1.35"
/EC_number="4.2.1.17"
/EC_number="5.1.2.3"
/EC_number="5.3.3.8"
/inference="EXISTENCE: similar to AA
sequence:SwissProt:Q9HZJ2.1"
/note="includes enoyl-CoA hydratase,
delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase,
3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA
epimerase; catalyzes the formation of an hydroxyacyl-CoA
by addition of water on enoyl-CoA; also exhibits
3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA
dehydrogenase activities; forms a heterotetramer with
FadA; similar to FadI2J2 complex; functions in
beta-oxidation of fatty acids; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/transl_table=11
BEGIN
1 MIYQGKAITV KPLEGGIVEL NFDLKGESVN KFNRLTLSEL RAAVDAIKAD ASVKGVIVTS
61 GKDVFIVGAD ITEFVDNFQL PDEELMAGNL EANKIFSDFE DLDVPTVAAI NGIALGGGLE
121 MCLAADFRVM SATAKVGLPE VKLGIYPGFG GTVRLPRLIG CDNAVEWIAS GKENKAEDAL
181 KVGAVDAVVA PEQLQAAALD LAKRAVAGEL DHKARRQPKL EKLKLNAIEQ MMAFETAKGF
241 VAGQAGPNYP APVEAIKSIQ KAANFGRDKA LEVEAAGFVK LAKTSVAQSL IGLFLNDQEL
301 KKKAKKYDEV AKDVKLAAVL GAGIMGGGIA YQSALKGTPI LMKDIREEGI QMGLNEAAKL
361 LGKRVEKGRL TPAKMAEALN GIRPTMSYGD FGNVDIVVEA VVENPKVKQA VLAEVEGAVK
421 EDAIIASNTS TISISLLAQA LKRPENFCGM HFFNPVHMMP LVEVIRGEKT GETAIATTVA
481 YAKKMGKSPI VVNDCPGFLV NRVLFPYFGG FAKLLSFGVD FVRIDKVMEK FGWPMGPAYL
541 SDVVGIDTGH HGRDVMAEGF PDRMAVEGKT AVDVMYEANR LGQKNGKGFY AYETDKRGKP
601 KKVTDPQAYE VLKPIVVEQR EVTDEDIVNF MMIPLCLETV RCLEDGIVET AAEADMGLIY
661 GIGFPPFRGG ALRYIDSIGV AEFVALADKY AELGALYHPT AKLREMAKNG QKFFG
//