LOCUS AKO85506.1 510 aa PRT BCT 27-AUG-2015
DEFINITION Pseudomonas aeruginosa DSM 50071 = NBRC 12689 3-hydroxyacyl-
CoA dehydrogenase protein.
ACCESSION CP012001-1346
PROTEIN_ID AKO85506.1
SOURCE Pseudomonas aeruginosa DSM 50071 = NBRC 12689
ORGANISM Pseudomonas aeruginosa DSM 50071 = NBRC 12689
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE First Complete Genome Sequence of Pseudomonas aeruginosa (Schroeter
1872) Migula 1900 (DSM 50071T), Determined Using PacBio
Single-Molecule Real-Time Technology
JOURNAL Genome Announc 3 (4), e00932-15 (2015)
PUBMED 26294631
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2015) Research and Development Division, Okinawa
Institute of Advanced Sciences, Okinawa Biotechnology Business
Support Center, Suite109, 5-1, Suzaki, Uruma, Okinawa 904-2234,
Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP3 v. 2.3.0
Genome Coverage :: 843x
Sequencing Technology :: PacBio
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/02/2015 10:33:57
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 2.10
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 5,805
CDS :: 5,710
Pseudo Genes :: 18
CRISPR Arrays :: 3
rRNAs :: 12 (5S, 16S, 23S)
tRNAs :: 64
ncRNA :: 1
Frameshifted Genes :: 11
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa DSM 50071 = NBRC 12689"
/mol_type="genomic DNA"
/strain="DSM 50071"
/culture_collection="DSM:50071"
/type_material="type strain of Pseudomonas aeruginosa"
/db_xref="taxon:1123015"
protein /locus_tag="PA50071_06815"
/EC_number="1.1.1.157"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003143274.1"
/note="converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA
in phenylacetate degradation; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/transl_table=11
BEGIN
1 MSEPSIVLIG IVGTGAMGQG IAQLAACAGL SVLLYDSRQG AALQAREQIA TVLARQVERG
61 RLEAEAVERA MGNLRVVEDL RVLGGCQLVI EAIVENLEAK QALFRQLEEV VGDEAILASN
121 TSSLSVTAIA SACRDPGRVA GLHFFNPVPL MRLVEVIEGL ATRTGIAERL CALVATFGHQ
181 AVRATDSPGF IVNHAGRAFG TEALRILGEG VAPVAAIDEV LREGAGFRMG PFELFDLVGL
241 DVSLPVMESI YRQYYEEPRY RPHPLLRQML AAGRLGRKSG QGFYRYDGAG QVPVAAPAVA
301 PGAALPPVWL GVDDEHDRAP LLTLLQRLGA EVESGERPSG AALCLLAPLG ADVSAAARRF
361 AVDPTRSLAI DVLSDLERHR CLMACPATRA ELQQAARTLF ARDGVGVTLI RDSAGFIVQR
421 TLASIVNLAC DIAQQGIASV EHIDLAVRLG LGYPLGPLEW GDRMGAGRVL RILERLHALS
481 GDPRYRPSPW LRRRAQLGLS LRQPDSPLAS
//