LOCUS AKO85114.1 386 aa PRT BCT 27-AUG-2015
DEFINITION Pseudomonas aeruginosa DSM 50071 = NBRC 12689 D-alanyl-
D-alanine carboxypeptidase protein.
ACCESSION CP012001-933
PROTEIN_ID AKO85114.1
SOURCE Pseudomonas aeruginosa DSM 50071 = NBRC 12689
ORGANISM Pseudomonas aeruginosa DSM 50071 = NBRC 12689
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE First Complete Genome Sequence of Pseudomonas aeruginosa (Schroeter
1872) Migula 1900 (DSM 50071T), Determined Using PacBio
Single-Molecule Real-Time Technology
JOURNAL Genome Announc 3 (4), e00932-15 (2015)
PUBMED 26294631
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2015) Research and Development Division, Okinawa
Institute of Advanced Sciences, Okinawa Biotechnology Business
Support Center, Suite109, 5-1, Suzaki, Uruma, Okinawa 904-2234,
Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP3 v. 2.3.0
Genome Coverage :: 843x
Sequencing Technology :: PacBio
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/02/2015 10:33:57
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 2.10
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 5,805
CDS :: 5,710
Pseudo Genes :: 18
CRISPR Arrays :: 3
rRNAs :: 12 (5S, 16S, 23S)
tRNAs :: 64
ncRNA :: 1
Frameshifted Genes :: 11
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa DSM 50071 = NBRC 12689"
/mol_type="genomic DNA"
/strain="DSM 50071"
/culture_collection="DSM:50071"
/type_material="type strain of Pseudomonas aeruginosa"
/db_xref="taxon:1123015"
protein /locus_tag="PA50071_04730"
/EC_number="3.4.16.4"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_019371470.1"
/note="penicillin-binding protein 5; removes C-terminal
D-alanyl residues from sugar-peptide cell wall precursors;
Derived by automated computational analysis using gene
prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MNITTIAKRL SLLVLFIAPT AGWAAESMVP APPQLAAKSY VLMDGESGQV LVENNGDQRL
61 PPASLTKLMT AYIATKEIEA GRIGENDLVT VSEHAWRTGG SRMFIKVGSQ VSVSDLLHGI
121 IIQSGNDASV ALAEHIAGSE DAFADMMNTT AQKLGLTNSH FMDATGLPNP DHYSSARDMA
181 VLARAIIYGE PSHYAIYAQK EFLWNNIKQP NRNLLLWRDK TVDGLKTGHT DEAGYCLVAS
241 AVRDGQRMIA VVFGTNSEQA RAAETQKLLT YGFRFFESRN FYKKGTELTK GLVWKGSEHE
301 VKAGLAEDLT MTLPRGQMQK LQASMVLEPQ LMAPIQQGQV IGKVEVKLDD KVIRSADLVA
361 LNAVEEGGFF RRLWDSIRLF FYGLFN
//