LOCUS       AJF01462.1               251 aa    PRT              BCT 20-JUN-2017
DEFINITION  Mycobacterium tuberculosis H37RvSiena putative L,D-transpeptidase
            LdtA protein.
ACCESSION   CP007027-118
PROTEIN_ID  AJF01462.1
SOURCE      Mycobacterium tuberculosis H37RvSiena
  ORGANISM  Mycobacterium tuberculosis H37RvSiena
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1  (bases 1 to 4410911)
  AUTHORS   Santoro,F., Guerrini,V., Lazzeri,E., Iannelli,F. and Pozzi,G.
  TITLE     Genomic polymorphisms in a Laboratory Isolate of Mycobacterium
            tuberculosis Reference Strain H37Rv (ATCC27294)
  JOURNAL   New Microbiol. 40 (1), 62-69 (2017)
   PUBMED   27819398
REFERENCE   2  (bases 1 to 4410911)
  AUTHORS   Guerrini,V., Santoro,F. and Pozzi,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-DEC-2013) Medical Biotechnology, University of Siena,
            viale Bracci, Policlinico Le Scotte, Siena 53100, Italy
REFERENCE   3  (bases 1 to 4410911)
  AUTHORS   Guerrini,V., Santoro,F. and Pozzi,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2015) Medical Biotechnology, University of Siena,
            viale Bracci, Policlinico Le Scotte, Siena 53100, Italy
  REMARK    Protein update by submitter
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            Annotation modified by submitter.
            
            ##Assembly-Data-START##
            Assembly Method       :: Ray v. 2.3.1
            Coverage              :: 300
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 12/30/2013 09:28:23
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.3 (rev. 422554)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 4,146
            CDS                          :: 4,050
            Pseudo Genes                 :: 42
            CRISPR Arrays                :: 2
            rRNAs                        :: 3 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNA                        :: 6
            Frameshifted Genes           :: 34
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis H37RvSiena"
                     /mol_type="genomic DNA"
                     /strain="H37RvSiena"
                     /db_xref="taxon:1437856"
     protein         /gene="ldtA"
                     /locus_tag="Y980_0116c"
                     /experiment="EXISTENCE: identified in proteomics study"
                     /note="Rv0116c, (MTV031.10c) Probable
                     ldtA,L,D-transpeptidase, showing similarity to several
                     hypothetical mycobacterial proteins e.g. Rv1433 from
                     Mycobacterium tuberculosis (271 aa); and
                     Q49706|B1496_F2_81|U00013 from Mycobacterium leprae (271
                     aa); to the C-terminal regions of others like Rv0192 from
                     Mycobacterium tuberculosis (366 aa); and
                     Rv0192|Z97050|MTCI28_32 from Mycobacterium tuberculosis
                     cosmid (366 aa). Predicted to be an outer membrane protein
                     (See Song et al., 2008)."
                     /transl_table=11
                     /db_xref="GOA:L0T5Q5"
                     /db_xref="InterPro:IPR005490"
                     /db_xref="UniProtKB/TrEMBL:L0T5Q5"
BEGIN
        1 MRRVVRYLSV VVAITLMLTA ESVSIATAAV PPLQPIPGVA SVSPANGAVV GVAHPVVVTF
       61 TTPVTDRRAV ERSIRISTPH NTTGHFEWVA SNVVRWVPHR YWPPHTRVSV GVQELTEGFE
      121 TGDALIGVAS ISAHTFTVSR NGEVLRTMPA SLGKPSRPTP IGSFHAMSKE RTVVMDSRTI
      181 GIPLNSSDGY LLTAHYAVRV TWSGVYVHSA PWSVNSQGYA NVSHGCINLS PDNAAWYFDA
      241 VTVGDPIEVV G
//