LOCUS AJC73213.1 465 aa PRT BCT 19-SEP-2017 DEFINITION Pseudothermotoga hypogea DSM 11164 = NBRC 106472 tRNA- splicing ligase RtcB protein. ACCESSION CP007141-420 PROTEIN_ID AJC73213.1 SOURCE Pseudothermotoga hypogea DSM 11164 = NBRC 106472 ORGANISM Pseudothermotoga hypogea DSM 11164 = NBRC 106472 Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga. REFERENCE 1 (bases 1 to 2165416) AUTHORS Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and Ma,K. TITLE Genome sequencing of Thermotog hypogea JOURNAL Unpublished REFERENCE 2 (bases 1 to 2165416) AUTHORS Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and Ma,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 2.6 Genome Coverage :: 56X Sequencing Technology :: 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/17/2014 14:13:17 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.3 (rev. 423251) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,168 CDS :: 2,097 Pseudo Genes :: 21 CRISPR Arrays :: 4 rRNAs :: 3 (5S, 16S, 23S) tRNAs :: 46 ncRNA :: 1 Frameshifted Genes :: 9 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudothermotoga hypogea DSM 11164 = NBRC 106472" /mol_type="genomic DNA" /strain="DSM 11164 = NBRC 106472" /isolation_source="an African oil producing well" /culture_collection="DSM:11164" /type_material="type strain of Pseudothermotoga hypogea" /db_xref="taxon:1123384" /country="Cameroon" /collection_date="1979" protein /locus_tag="AJ81_02195" /inference="EXISTENCE: similar to AA sequence:RefSeq:YP_004659591.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MDIKRIDKYI FSIKGKNVDA IVFTDQETIN DPEFKEALQQ IVNVTHMPGI VAALAMPDIH 61 WGYGFPIGGV GVFDAKDGVI SPGGIGFDIN CGVRLMLTSL TFEEIKPQLR RLVEAIYDAV 121 PVGVGASGAV KVSAKTLRKV CIEGAHWAVE NGYGFKEDLE RIEDTGKLSP ANPDHVSSKA 181 FERGLDELST LGAGNHFIEI QKVERIFDPK VAEAFGIFEG QVAISVHCGS RGFGHQIATD 241 YIQIMRDKLA HHNKDLPDKQ LINAPFEHPI GQQYFSAMNC AANYAFANRQ MIGHAVRMAL 301 LKIFPTAQVW LLYDVAHNIA KVEVYNNRKL IVHRKGATRS LGPKNPLLPS LYSDVGQPVL 361 IPGSMGSASY VLVGTKKAEE MSYGSTAHGA GRTLGRRAAL RSLSYEQVLN ELKQKGIEVM 421 SKGKKTLVEE APETYKDVDR VVEIVDQVGL SRKVARLVPL GVVKG //