LOCUS AJC72976.1 918 aa PRT BCT 19-SEP-2017 DEFINITION Pseudothermotoga hypogea DSM 11164 = NBRC 106472 transcription- repair coupling factor protein. ACCESSION CP007141-161 PROTEIN_ID AJC72976.1 SOURCE Pseudothermotoga hypogea DSM 11164 = NBRC 106472 ORGANISM Pseudothermotoga hypogea DSM 11164 = NBRC 106472 Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga. REFERENCE 1 (bases 1 to 2165416) AUTHORS Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and Ma,K. TITLE Genome sequencing of Thermotog hypogea JOURNAL Unpublished REFERENCE 2 (bases 1 to 2165416) AUTHORS Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and Ma,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 2.6 Genome Coverage :: 56X Sequencing Technology :: 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/17/2014 14:13:17 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.3 (rev. 423251) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,168 CDS :: 2,097 Pseudo Genes :: 21 CRISPR Arrays :: 4 rRNAs :: 3 (5S, 16S, 23S) tRNAs :: 46 ncRNA :: 1 Frameshifted Genes :: 9 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudothermotoga hypogea DSM 11164 = NBRC 106472" /mol_type="genomic DNA" /strain="DSM 11164 = NBRC 106472" /isolation_source="an African oil producing well" /culture_collection="DSM:11164" /type_material="type strain of Pseudothermotoga hypogea" /db_xref="taxon:1123384" /country="Cameroon" /collection_date="1979" protein /locus_tag="AJ81_00840" /inference="EXISTENCE: similar to AA sequence:RefSeq:YP_004659891.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLLIVPTEKE ASQIASTLNA RYFPGPDVFP FEEVPVSFFV RKGRIETLWS LLNKECKLVV 61 TSVHSASRYT MSVESLKSLS MRFKRNERFV DADWLQRLGY ERAYLVRSGG EFAIRGDIID 121 VFPPVYERPV RIELFGNSIE DIRSFDVISQ TSVEKLEEFV LLPAREYACE SHDYDTIVGK 181 AGSNGTIFDY ADFEILLVDA DRCFEEFAKL ERQIREFLSD EQYEEYRKYS RLNLAELQRR 241 LQVAKEVQLD LQGLEYSEKK GSLLQVPIID EEELNVGDFV VHENYGVGVF EAVKPVTNAL 301 GTKEYIVIRY EDATIYVPVE RLDKIHKYIG DPDVKIDRLH GGTWKRRLDK VKEDLRRKIA 361 ELVDIYMRRQ EAKGLGLVGD FDLERRFAET FPYVETHDQS VAIQDVLEDL ASDRPMDRLL 421 CGDAGYGKTE VALRAAFRCV VSGKQVALLV PTTVLAKQHY RIFKQRMEPF GVSVALLDRS 481 VPKSERNKIV EDLRAGKIDV LIGTSALLSD NVKFSDLGLV IIDEEQNFGV EQKESFKKIR 541 LNVNVLSMSA TPIPRTLHMA MNGMRDMSVL TTPPLGRLPV VTYVARYDDR LVRGAILREI 601 NRGGQVIYVH NRVEDLREVY EKICRLVPEA RIVMAHGQMP TRKLMEAVRS FYERNSDVIV 661 CTSIMQNGID VPSANTIIVD DAHRYGLAQL YQLRGRVGRS DKRAFAYFLF DSELNLSALK 721 RLQVIREFSG PGSGLKIALK DMEIRGIGTI FGFEQHGNVN AVGLNMYLQI LNEELKHTMH 781 AEPLERVDVE IEGVPGSFYI PEDFIENEME RLRTYRRMAS CESLKSLDEL KAELRDRFGE 841 LPEQVEQLID LFKIRLVAIQ KKIKKIAFDE TTLKVYTENG SLKLPGKFIY NEKEKVYLLY 901 NVPAERCLLL LKKIFLRD //