LOCUS       AJC72976.1               918 aa    PRT              BCT 19-SEP-2017
DEFINITION  Pseudothermotoga hypogea DSM 11164 = NBRC 106472 transcription-
            repair coupling factor protein.
ACCESSION   CP007141-161
PROTEIN_ID  AJC72976.1
SOURCE      Pseudothermotoga hypogea DSM 11164 = NBRC 106472
  ORGANISM  Pseudothermotoga hypogea DSM 11164 = NBRC 106472
            Bacteria; Thermotogae; Thermotogales; Thermotogaceae;
            Pseudothermotoga.
REFERENCE   1  (bases 1 to 2165416)
  AUTHORS   Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and
            Ma,K.
  TITLE     Genome sequencing of Thermotog hypogea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2165416)
  AUTHORS   Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and
            Ma,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Biology, University of
            Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1,
            Canada
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.6
            Genome Coverage       :: 56X
            Sequencing Technology :: 454 GS FLX Titanium
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 01/17/2014 14:13:17
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.3 (rev. 423251)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 2,168
            CDS                          :: 2,097
            Pseudo Genes                 :: 21
            CRISPR Arrays                :: 4
            rRNAs                        :: 3 (5S, 16S, 23S)
            tRNAs                        :: 46
            ncRNA                        :: 1
            Frameshifted Genes           :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudothermotoga hypogea DSM 11164 = NBRC
                     106472"
                     /mol_type="genomic DNA"
                     /strain="DSM 11164 = NBRC 106472"
                     /isolation_source="an African oil producing well"
                     /culture_collection="DSM:11164"
                     /type_material="type strain of Pseudothermotoga hypogea"
                     /db_xref="taxon:1123384"
                     /country="Cameroon"
                     /collection_date="1979"
     protein         /locus_tag="AJ81_00840"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:YP_004659891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MLLIVPTEKE ASQIASTLNA RYFPGPDVFP FEEVPVSFFV RKGRIETLWS LLNKECKLVV
       61 TSVHSASRYT MSVESLKSLS MRFKRNERFV DADWLQRLGY ERAYLVRSGG EFAIRGDIID
      121 VFPPVYERPV RIELFGNSIE DIRSFDVISQ TSVEKLEEFV LLPAREYACE SHDYDTIVGK
      181 AGSNGTIFDY ADFEILLVDA DRCFEEFAKL ERQIREFLSD EQYEEYRKYS RLNLAELQRR
      241 LQVAKEVQLD LQGLEYSEKK GSLLQVPIID EEELNVGDFV VHENYGVGVF EAVKPVTNAL
      301 GTKEYIVIRY EDATIYVPVE RLDKIHKYIG DPDVKIDRLH GGTWKRRLDK VKEDLRRKIA
      361 ELVDIYMRRQ EAKGLGLVGD FDLERRFAET FPYVETHDQS VAIQDVLEDL ASDRPMDRLL
      421 CGDAGYGKTE VALRAAFRCV VSGKQVALLV PTTVLAKQHY RIFKQRMEPF GVSVALLDRS
      481 VPKSERNKIV EDLRAGKIDV LIGTSALLSD NVKFSDLGLV IIDEEQNFGV EQKESFKKIR
      541 LNVNVLSMSA TPIPRTLHMA MNGMRDMSVL TTPPLGRLPV VTYVARYDDR LVRGAILREI
      601 NRGGQVIYVH NRVEDLREVY EKICRLVPEA RIVMAHGQMP TRKLMEAVRS FYERNSDVIV
      661 CTSIMQNGID VPSANTIIVD DAHRYGLAQL YQLRGRVGRS DKRAFAYFLF DSELNLSALK
      721 RLQVIREFSG PGSGLKIALK DMEIRGIGTI FGFEQHGNVN AVGLNMYLQI LNEELKHTMH
      781 AEPLERVDVE IEGVPGSFYI PEDFIENEME RLRTYRRMAS CESLKSLDEL KAELRDRFGE
      841 LPEQVEQLID LFKIRLVAIQ KKIKKIAFDE TTLKVYTENG SLKLPGKFIY NEKEKVYLLY
      901 NVPAERCLLL LKKIFLRD
//