LOCUS AJC72902.1 1172 aa PRT BCT 19-SEP-2017 DEFINITION Pseudothermotoga hypogea DSM 11164 = NBRC 106472 DNA-directed RNA polymerase subunit beta protein. ACCESSION CP007141-75 PROTEIN_ID AJC72902.1 SOURCE Pseudothermotoga hypogea DSM 11164 = NBRC 106472 ORGANISM Pseudothermotoga hypogea DSM 11164 = NBRC 106472 Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga. REFERENCE 1 (bases 1 to 2165416) AUTHORS Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and Ma,K. TITLE Genome sequencing of Thermotog hypogea JOURNAL Unpublished REFERENCE 2 (bases 1 to 2165416) AUTHORS Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and Ma,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 2.6 Genome Coverage :: 56X Sequencing Technology :: 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/17/2014 14:13:17 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.3 (rev. 423251) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,168 CDS :: 2,097 Pseudo Genes :: 21 CRISPR Arrays :: 4 rRNAs :: 3 (5S, 16S, 23S) tRNAs :: 46 ncRNA :: 1 Frameshifted Genes :: 9 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudothermotoga hypogea DSM 11164 = NBRC 106472" /mol_type="genomic DNA" /strain="DSM 11164 = NBRC 106472" /isolation_source="an African oil producing well" /culture_collection="DSM:11164" /type_material="type strain of Pseudothermotoga hypogea" /db_xref="taxon:1123384" /country="Cameroon" /collection_date="1979" protein /locus_tag="AJ81_00395" /inference="EXISTENCE: similar to AA sequence:RefSeq:YP_001470108.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRTALYGKRE RLTFGHTVDA LKVPNLIAIQ IESYREFLEK GLMEILRKFS PITSQPHKGD 61 LRKGEKGFIL EFVSTRIGEP NATIEECKQK GLTYQVPIYA TVRITDVNSG EMREEEAFLG 121 SIPYMTENGT FVINGAERVI VNQLVRAPGV YFVDEIPKTQ TAAPIYVAHF LPVKGAWLEL 181 LYNTADDMFY ARIDRKRRIN LFLLFKALGF ENDLDILDLF PDPVDAEDEY SMMKAVGSII 241 LEDVSIDGKK VVERGGVLTE HAARTILESK ISTIVRAHPV AQKTLEKLNS AYGEVDSNRA 301 YIEIYRKLKP GEIPRVNAAK AYLNSLYFTP ERFELSEVGR YKINRKLQQA YRKYLVQVKK 361 MSDSEAEKMQ YNPTELVLTP MDIVLATRYL LEVSKNPEIM DTKDHLGNKR VRTVGELIKL 421 EFERAFSKAQ RLIQERLALY NSLDKISVQS LINIKTIIAG INQFFATSPL SQFMEQVNPL 481 AELTHKRRLT AVGPGGLKRE RARFEVRDVH HSHYGRMCPI ETPEGANIGL ITSLAVYATV 541 DEFGFLTTPY RRVKKGRVTD EIVYLTADEE EHYHIAPCTV RVDENMMIVE DRVPVRYMQK 601 ILYVEKEKVQ FMDVSTKQIV SVSTSLIPFL EHDDANRALM GSNMQRQAVP LLKPEAPFVA 661 TGVEHDAALY SGYLVVAKHD GIVKKVDARR IVVHRTDENG NLMYKDGKPL MDEYRLMKFV 721 RTNQDTVINQ RPIVNVGDRV KRGEVIADGP ATDMGELALG RNVLVAFMSW EGYNFEDAIL 781 VSEELLEEDA FTSIHIEVYE TQARDTRLGP EEITADIPNV NKEALRNLDE NGIVRIGAYV 841 GPQDILVGKV TPKGEGETTP EEKIIRSVFG ERGKDVKDTS LRLPHGTEGR VIDIQVFDKE 901 DVAELGPGVN KLVKVYVASK KTLEVGDKLA GRHGNKGVVS KILPREDMPF LPDGTPVQIV 961 LSPLGVPSRM NVGQILETHL GWLAKLTNSW FATPVFDGAK EEDILPWLYK ERKALGLEEG 1021 DDENNPSGKV LLRDGRTGEP FAEPVVVGYI YMMKLIHIAR DKIHARSTGP YSLIHQQPLG 1081 GKAQFGGQRF GEMEVWALEA HGASHTLNEM LTIKSDDIKG RNEVYKAILK GKNIPEPGIP 1141 ESFRVLIKEL RGLALDVRVY DENGNEVDID RF //