LOCUS       AJC72902.1              1172 aa    PRT              BCT 19-SEP-2017
DEFINITION  Pseudothermotoga hypogea DSM 11164 = NBRC 106472 DNA-directed
            RNA polymerase subunit beta protein.
ACCESSION   CP007141-75
PROTEIN_ID  AJC72902.1
SOURCE      Pseudothermotoga hypogea DSM 11164 = NBRC 106472
  ORGANISM  Pseudothermotoga hypogea DSM 11164 = NBRC 106472
            Bacteria; Thermotogae; Thermotogales; Thermotogaceae;
            Pseudothermotoga.
REFERENCE   1  (bases 1 to 2165416)
  AUTHORS   Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and
            Ma,K.
  TITLE     Genome sequencing of Thermotog hypogea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2165416)
  AUTHORS   Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and
            Ma,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Biology, University of
            Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1,
            Canada
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.6
            Genome Coverage       :: 56X
            Sequencing Technology :: 454 GS FLX Titanium
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 01/17/2014 14:13:17
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.3 (rev. 423251)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 2,168
            CDS                          :: 2,097
            Pseudo Genes                 :: 21
            CRISPR Arrays                :: 4
            rRNAs                        :: 3 (5S, 16S, 23S)
            tRNAs                        :: 46
            ncRNA                        :: 1
            Frameshifted Genes           :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudothermotoga hypogea DSM 11164 = NBRC
                     106472"
                     /mol_type="genomic DNA"
                     /strain="DSM 11164 = NBRC 106472"
                     /isolation_source="an African oil producing well"
                     /culture_collection="DSM:11164"
                     /type_material="type strain of Pseudothermotoga hypogea"
                     /db_xref="taxon:1123384"
                     /country="Cameroon"
                     /collection_date="1979"
     protein         /locus_tag="AJ81_00395"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:YP_001470108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MRTALYGKRE RLTFGHTVDA LKVPNLIAIQ IESYREFLEK GLMEILRKFS PITSQPHKGD
       61 LRKGEKGFIL EFVSTRIGEP NATIEECKQK GLTYQVPIYA TVRITDVNSG EMREEEAFLG
      121 SIPYMTENGT FVINGAERVI VNQLVRAPGV YFVDEIPKTQ TAAPIYVAHF LPVKGAWLEL
      181 LYNTADDMFY ARIDRKRRIN LFLLFKALGF ENDLDILDLF PDPVDAEDEY SMMKAVGSII
      241 LEDVSIDGKK VVERGGVLTE HAARTILESK ISTIVRAHPV AQKTLEKLNS AYGEVDSNRA
      301 YIEIYRKLKP GEIPRVNAAK AYLNSLYFTP ERFELSEVGR YKINRKLQQA YRKYLVQVKK
      361 MSDSEAEKMQ YNPTELVLTP MDIVLATRYL LEVSKNPEIM DTKDHLGNKR VRTVGELIKL
      421 EFERAFSKAQ RLIQERLALY NSLDKISVQS LINIKTIIAG INQFFATSPL SQFMEQVNPL
      481 AELTHKRRLT AVGPGGLKRE RARFEVRDVH HSHYGRMCPI ETPEGANIGL ITSLAVYATV
      541 DEFGFLTTPY RRVKKGRVTD EIVYLTADEE EHYHIAPCTV RVDENMMIVE DRVPVRYMQK
      601 ILYVEKEKVQ FMDVSTKQIV SVSTSLIPFL EHDDANRALM GSNMQRQAVP LLKPEAPFVA
      661 TGVEHDAALY SGYLVVAKHD GIVKKVDARR IVVHRTDENG NLMYKDGKPL MDEYRLMKFV
      721 RTNQDTVINQ RPIVNVGDRV KRGEVIADGP ATDMGELALG RNVLVAFMSW EGYNFEDAIL
      781 VSEELLEEDA FTSIHIEVYE TQARDTRLGP EEITADIPNV NKEALRNLDE NGIVRIGAYV
      841 GPQDILVGKV TPKGEGETTP EEKIIRSVFG ERGKDVKDTS LRLPHGTEGR VIDIQVFDKE
      901 DVAELGPGVN KLVKVYVASK KTLEVGDKLA GRHGNKGVVS KILPREDMPF LPDGTPVQIV
      961 LSPLGVPSRM NVGQILETHL GWLAKLTNSW FATPVFDGAK EEDILPWLYK ERKALGLEEG
     1021 DDENNPSGKV LLRDGRTGEP FAEPVVVGYI YMMKLIHIAR DKIHARSTGP YSLIHQQPLG
     1081 GKAQFGGQRF GEMEVWALEA HGASHTLNEM LTIKSDDIKG RNEVYKAILK GKNIPEPGIP
     1141 ESFRVLIKEL RGLALDVRVY DENGNEVDID RF
//