LOCUS AJC72901.1 1650 aa PRT BCT 19-SEP-2017 DEFINITION Pseudothermotoga hypogea DSM 11164 = NBRC 106472 DNA-directed RNA polymerase subunit beta' protein. ACCESSION CP007141-74 PROTEIN_ID AJC72901.1 SOURCE Pseudothermotoga hypogea DSM 11164 = NBRC 106472 ORGANISM Pseudothermotoga hypogea DSM 11164 = NBRC 106472 Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga. REFERENCE 1 (bases 1 to 2165416) AUTHORS Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and Ma,K. TITLE Genome sequencing of Thermotog hypogea JOURNAL Unpublished REFERENCE 2 (bases 1 to 2165416) AUTHORS Zhang,X., Alvare,G., Fristensky,B., Chen,L., Suen,T., Chen,Q. and Ma,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 2.6 Genome Coverage :: 56X Sequencing Technology :: 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/17/2014 14:13:17 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.3 (rev. 423251) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,168 CDS :: 2,097 Pseudo Genes :: 21 CRISPR Arrays :: 4 rRNAs :: 3 (5S, 16S, 23S) tRNAs :: 46 ncRNA :: 1 Frameshifted Genes :: 9 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudothermotoga hypogea DSM 11164 = NBRC 106472" /mol_type="genomic DNA" /strain="DSM 11164 = NBRC 106472" /isolation_source="an African oil producing well" /culture_collection="DSM:11164" /type_material="type strain of Pseudothermotoga hypogea" /db_xref="taxon:1123384" /country="Cameroon" /collection_date="1979" protein /locus_tag="AJ81_00390" /inference="EXISTENCE: similar to AA sequence:RefSeq:YP_001470109.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAISTFKRKI AAVKIGVASP DTIRSWSSGE VKKPETINYR TFKPERDGLF CEKIFGPTKD 61 YECACGKYKG KKYEGTVCER CGVRVESKEA RRKRMGHIEL AAPVVHIWYL KSTPSILSTL 121 LNIPARDLEN IVYYGSRHII EKAYIVTNPK KTSFAEGDVI YETEYNIYKK VLDFEAEQSV 181 IVKNPKTPVI SEIDGEVSLK NERSNTGRTI TWIIVRNVVR SHVQLFPGMI LLVKNGQEVS 241 EGDILVAEKE VPALYAPFDG TVEIDELTSS LTLKPLATSK DQPLTVSIPY CCRLTVKNGA 301 KVKAGDQIWT AGMIQALTSP ASGKVVFGKE LNVRPLEDGS YEVLSSGSIY VEQTAIEKKY 361 PIFEGALAYV NDGDRVKAGD YLADRFLFED EHLSLSEYAI FQQYYPDQFT VETEVENDRP 421 ILAITKIDEE LARETSLTVG SIITENEYEA YRELYPGKIE AHYGAAAVKK LLEMIDLEKL 481 KAQIEAELAE LPKSSGRALK LLRRLKIVKS LINSGARPEW MVLEALPVIP PELRPMIQID 541 GGRFATTDLN DLYRRVINRN NRLKRFLELN APEVMIRNEM RMLQEAVDSL IYNGRVGRPV 601 ADRNGRPLKS LTDLVKGKKG RFRRNLLGKR VDYSGRAVIV VGPELKIHQC GLPKKMALEL 661 FKPFVLAKLL EEGGESSKTA RKLKKTIIER EMPEAWDVLE EVIKGQTVLL NRAPTLHRMS 721 IQAFEPKLIE GNAIQLHPLV CPPFNADFDG DQMAVHVPLS AAAQAEARYL MLSRYNIISP 781 AHGKPISMPG KDIIVGIYYL TAVSKDYDFV STDRIEFKFS SPEEAILAHS LGFVGLHTPV 841 LARVKQNGEE KTLKTTVGRI IFNEIVPEDL RDYSKTFGKK EIKDLIYETF KRHGMEATAD 901 LLDDMKDLGF HYATVSGLTI SLKDLVVSPK KNAIIKDALE KVEKVEQEYA EGFLTYEERY 961 KEIIRIWTKA TEEVQKVTYE ALGENPFNPV FMMVNSGARG NIDQVKQLAG MRGLMADPSG 1021 KTIEIPIISN FREGLNSIEF FISTHGARKG AADTALRTSS AGYLTRRLVD VAQSVFITTT 1081 DCGTENGVKA LELMSGTLTV QKLKDFLFGR ILARDVIDPL SGEVVKNPDN NREYVRNSML 1141 SDEDAEFLAK YVVSVPVCVE QVLDLQSLQL PASYAVTDEE IRLEDGTVYE VGTEVSWDLV 1201 RNARNAGKKQ IKIKVYPVVG TISQEIVWDK KGEKQLLVYQ EEIDEVTAML LEQNGVSAVK 1261 VRPNIYVRSP LTCEAEHGVC AMCYGMDLSN HKVVNVGEAV GIIAAQSIGE PGTQLTMRTF 1321 HTGGIATTAD ITQGLPRAEE LFEARKKLKE PEGIFSMVSG FVKDIKEVDG KKKIYIEDLA 1381 GEIHEYEVPE KVKEIVTRGQ KVLPGQMLTT GAVKLRRMMD ALGVEATAMY LLRETQKVYV 1441 EQGVDIHNKH FEIIIRQMLG RVEIVDPGDT DFLPGQLLTL SEAMRINNEI LKANAQVQSN 1501 RNMVVGKILA KKIVAKLKDE VEEIAPEGTE VSEDIVEKAV AAGVKEIVVL EDGKPVTYQI 1561 APKEPMKYRR RLLRITKASL EQEGWLSAAS FQQTPQVLTE AAIEGRIDYL RGLKENVIVG 1621 QLIPSGTGLE IFANIQIEET PRAAEEEKMA //