LOCUS       AIG78030.1               466 aa    PRT              BCT 01-OCT-2014
DEFINITION  Amycolatopsis japonica RNA polymerase sigma factor RpoD protein.
ACCESSION   CP008953-5089
PROTEIN_ID  AIG78030.1
SOURCE      Amycolatopsis japonica
  ORGANISM  Amycolatopsis japonica
            Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
            Amycolatopsis; Amycolatopsis japonica group.
REFERENCE   1  (bases 1 to 8961318)
  AUTHORS   Stegmann,E., Albersmeier,A., Spohn,M., Gert,H., Weber,T.,
            Wohlleben,W., Kalinowski,J. and Ruckert,C.
  TITLE     Complete genome sequence of the actinobacterium Amycolatopsis
            japonica MG417-CF17(T) (=DSM 44213T) producing
            (S,S)-N,N'-ethylenediaminedisuccinic acid
  JOURNAL   J. Biotechnol. (2014) In press
   PUBMED   25193710
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 8961318)
  AUTHORS   Ruckert,C., Stegmann,E., Spohn,M., Gert,H., Weber,T., Wohlleben,W.
            and Kalinowski,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2014) CeBiTec, Bielefeld University,
            Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.5.3
            Genome Coverage       :: 23.56x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /organism="Amycolatopsis japonica"
                     /mol_type="genomic DNA"
                     /strain="MG417-CF17"
                     /isolation_source="soil"
                     /culture_collection="DSM:44213"
                     /type_material="type strain of Amycolatopsis japonica"
                     /db_xref="taxon:208439"
                     /country="Japan"
     protein         /gene="rpoD"
                     /locus_tag="AJAP_25915"
                     /function="Sigma factors are initiation factors that
                     promote the attachment of RNA polymerase to specific
                     initiation sites and are then released. This is the
                     primary sigma factor of this bacterium."
                     /transl_table=11
BEGIN
        1 MAAARTATRS GTKTATAAGE PADEAATDAA KPAARKTAAK AAGAKKAPAK KAPAKKPSTK
       61 GAKTEDGDPE DGPGDLDEAD LETPDLSDLE EVEVDVVDAS VTEETDEDAE SEEDVEETPA
      121 RGRRTSTDKN AGKTSDNPDF VWDEEESEAL RQARKDAELT ASADSVRAYL KQIGKVALLN
      181 AEEEVELAKR IEAGLYAAER VRNAEEEGEK LVTQMRRDLK WIVRDGERAK NHLLEANLRL
      241 VVSLAKRYTG RGMAFLDLIQ EGNLGLIRAV EKFDYTKGYK FSTYATWWIR QAITRAMADQ
      301 ARTIRIPVHM VEVINKLGRI QRELLQDLGR EPTPEELAKE MDISPEKVLE IQQYAREPIS
      361 LDQTIGDEGD SQLGDFIEDS EAVVAVDAVS FTLLQDQLQS VLQTLSEREA GVVRLRFGLT
      421 DGQPRTLDEI GQVYGVTRER IRQIESKTMS KLRHPSRSQV LRDYLD
//