LOCUS AIG78030.1 466 aa PRT BCT 01-OCT-2014 DEFINITION Amycolatopsis japonica RNA polymerase sigma factor RpoD protein. ACCESSION CP008953-5089 PROTEIN_ID AIG78030.1 SOURCE Amycolatopsis japonica ORGANISM Amycolatopsis japonica Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis; Amycolatopsis japonica group. REFERENCE 1 (bases 1 to 8961318) AUTHORS Stegmann,E., Albersmeier,A., Spohn,M., Gert,H., Weber,T., Wohlleben,W., Kalinowski,J. and Ruckert,C. TITLE Complete genome sequence of the actinobacterium Amycolatopsis japonica MG417-CF17(T) (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid JOURNAL J. Biotechnol. (2014) In press PUBMED 25193710 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 8961318) AUTHORS Ruckert,C., Stegmann,E., Spohn,M., Gert,H., Weber,T., Wohlleben,W. and Kalinowski,J. TITLE Direct Submission JOURNAL Submitted (17-JUL-2014) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany COMMENT ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 2.5.3 Genome Coverage :: 23.56x Sequencing Technology :: 454 ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Amycolatopsis japonica" /mol_type="genomic DNA" /strain="MG417-CF17" /isolation_source="soil" /culture_collection="DSM:44213" /type_material="type strain of Amycolatopsis japonica" /db_xref="taxon:208439" /country="Japan" protein /gene="rpoD" /locus_tag="AJAP_25915" /function="Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This is the primary sigma factor of this bacterium." /transl_table=11 BEGIN 1 MAAARTATRS GTKTATAAGE PADEAATDAA KPAARKTAAK AAGAKKAPAK KAPAKKPSTK 61 GAKTEDGDPE DGPGDLDEAD LETPDLSDLE EVEVDVVDAS VTEETDEDAE SEEDVEETPA 121 RGRRTSTDKN AGKTSDNPDF VWDEEESEAL RQARKDAELT ASADSVRAYL KQIGKVALLN 181 AEEEVELAKR IEAGLYAAER VRNAEEEGEK LVTQMRRDLK WIVRDGERAK NHLLEANLRL 241 VVSLAKRYTG RGMAFLDLIQ EGNLGLIRAV EKFDYTKGYK FSTYATWWIR QAITRAMADQ 301 ARTIRIPVHM VEVINKLGRI QRELLQDLGR EPTPEELAKE MDISPEKVLE IQQYAREPIS 361 LDQTIGDEGD SQLGDFIEDS EAVVAVDAVS FTLLQDQLQS VLQTLSEREA GVVRLRFGLT 421 DGQPRTLDEI GQVYGVTRER IRQIESKTMS KLRHPSRSQV LRDYLD //