LOCUS AGT31443.1 239 aa PRT BCT 18-JAN-2019 DEFINITION Geobacillus genomosp. 3 RNA polymerase sigma 70 protein. ACCESSION CP006254-1039 PROTEIN_ID AGT31443.1 SOURCE Geobacillus genomosp. 3 ORGANISM Geobacillus genomosp. 3 Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus. REFERENCE 1 (bases 1 to 3446630) AUTHORS Shintani,M., Ohtsubo,Y., Fukuda,K., Hosoyama,A., Ohji,S., Yamazoe,A., Fujita,N., Nagata,Y., Tsuda,M., Hatta,T. and Kimbara,K. TITLE Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937) JOURNAL Genome Announc 2 (1), e01213-13 (2014) PUBMED 24459274 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3446630) AUTHORS Shintani,M., Hatta,T. and Kimbara,K. TITLE Direct Submission JOURNAL Submitted (13-JUL-2013) Department of Applied Chemistry and Biochemical Engineering, Graduate School of Engineering, Shizuoka University, 3-5-1 Johoku Naka-ku, Hamamatsu, Shizuoka 4328561, Japan REFERENCE 3 (bases 1 to 3446630) AUTHORS Shintani,M., Ohtsubo,Y., Fukuda,K., Hosoyama,A., Ohji,S., Yamazoe,A., Fujita,N., Nagata,Y., Tsuda,M., Hatta,T. and Kimbara,K. TITLE Direct Submission JOURNAL Submitted (18-NOV-2013) Department of Applied Chemistry and Biochemical Engineering, Graduate School of Engineering, Shizuoka University, 3-5-1 Johoku Naka-ku, Hamamatsu, Shizuoka 4328561, Japan REMARK Sequence update by submitter COMMENT On Nov 18, 2013 this sequence version replaced CP006254.1. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation modified by submitter. ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 2.8 Genome Coverage :: 120X Sequencing Technology :: 454 GS FLX Titanium; Illumina Hiseq 1000; Miseq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/12/2013 12:26:16 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.1 (rev. 404602) Features Annotated :: Gene; CDS; rRNA; tRNA; repeat_region Genes :: 3,650 CDS :: 3,524 Pseudo Genes :: 8 CRISPR Arrays :: 1 rRNAs :: 30 (5S, 16S, 23S) tRNAs :: 88 Frameshifted Genes :: 8 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Geobacillus genomosp. 3" /mol_type="genomic DNA" /strain="JF8" /db_xref="taxon:1921421" protein /locus_tag="M493_05725" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; Derived by automated computational analysis using gene prediction method: GeneMarkS+." /transl_table=11 BEGIN 1 MKKWKLRFMY WLYKLLAKLG LKTDEIYYIG GSEALPPPLT KEEEERLIER LAAGDETARS 61 LLIERNLRLV VYIARKFENT GIHIEDLISI GTIGLIKAVN TFNPEKKIKL ATYASRCIEN 121 EILMYLRRNN KVRAEVSFDE PLNIDWDGNE LLLSDVLGTD DDVITKDLEA DVDRRLLLNA 181 LRQLSDREKQ IMELRFGLSG GEEKTQKDVA DLLGISQSYI SRLEKRIIKR LRKEFNKMM //