LOCUS AGF91509.1 2375 aa PRT HTG 26-FEB-2013
DEFINITION Cyanophage P-SS1 hypothetical protein protein.
ACCESSION JF974306-214
PROTEIN_ID AGF91509.1
SOURCE Cyanophage P-SS1
ORGANISM Cyanophage P-SS1
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; Kyanoviridae; Ronodorvirus; Ronodorvirus ssm4.
REFERENCE 1 (bases 1 to 178284)
AUTHORS Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q.,
Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S.,
Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE The Genome Sequence of Cyanophage P-SS1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 178284)
AUTHORS Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q.,
Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S.,
Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2010) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT This genome was sequenced by the Broad Institute and co-owned with
CAMERA.
##Metadata-START##
Isolation method :: double dilution series
Template preparation method :: lysate
Phage/virus type :: DNA:ds Viral DNA
Phage/virus "hybrid" information :: Not available
Phage/virus taxonomy :: Siphoviridae
Phage/virus strain :: Not available
Morphology :: Siphovirus
Latitude :: 38.10 N
Longitude :: 73.09 W
Depth (m) :: 60.00
Salinity (psu) :: 36.50
Temperature (C) :: 22.40
Collection date :: 12-Dec-2001
Sample collection site :: slope
Habitat description :: open ocean
Other metadata available :: Binder cruise
Lab Host :: Prochlorococcus marinus str.
MIT 9313
##Metadata-END##
* NOTE: This is a 'working draft' sequence. It currently
* consists of 2 contigs. The true order of the pieces
* is not known and their order in this sequence record is
* arbitrary. Gaps between the contigs are represented as
* runs of N, but the exact sizes of the gaps are unknown.
* This record will be updated with the finished sequence
* as soon as it is available and the accession number will
* be preserved.
* 1 150061: contig of 150061 bp in length
* 150062 150161: gap of unknown length
* 150162 178284: contig of 28123 bp in length.
FEATURES Qualifiers
source /organism="Cyanophage P-SS1"
/mol_type="genomic DNA"
/strain="P-SS1"
/isolation_source="slope"
/db_xref="taxon:889957"
/lab_host="Prochlorococcus marinus str. MIT 9313"
/lat_lon="38.10 N 73.09 W"
/collection_date="12-Dec-2001"
protein /locus_tag="CPYG_00215"
/transl_table=11
BEGIN
1 MQSILQNQVE NVGAHLFKDG AMVIPGQVGY DLNVDCILLQ ESFLGADVEL YRSQLTDKII
61 TGLTSGVKAK VLYSISDTES TKGYITLYVK YIESGGTGNT QQTFSNNEQL ITDTEITFGT
121 TLIEVGSPFA QLLPTGALQT GSVAYVQDGV YFIRGFFVDV PYQYILLDQY GTNPSYRIGL
181 DIQESIITPE DDLSLNDNAA GTSNYAAPGS HRFRITTNLV KKLLTDDADK DFIELLRINN
241 SKVEQLVERS AYSELEKTMA TRTFEESGDY VVRDFDINIR ENLDDTFNNG VYAIGSTTAD
301 GNTAAENMYA VEFGPGTAYV KGYRVSTLSP TYVDLEKPRD TQSAQNVNIP FEVGNFVNVN
361 NIYGFPNATG STITNAYQTC QIRDTFTSSP GTGAGNIIGY ARILSCEYAQ NMDATFGDAD
421 DVYKTVLFDI QMFTILDMAS SVSVTVGSQV VGATSGARGY VTETFSANHI DLYQVEGTFT
481 PGEMLTVDGL NLDTIDNIHY YNFSDARQLV ARDENTSAVE FSADIILEDI AVVQGSTFTY
541 DATGSAEKIT GLQSNFALDL RPGDRLYFNN TQYVDVDKID PNSLSTTGIS SIFDYTSATG
601 QTVKVDPTAA PSAGTYTALL RYRAKLFEVE NANLLSPMPK KYVKSIADES MTVRRTFDAQ
661 TVSSNSISIT LPENEQFASI TNENYTIVVL AGSNSSYPVG AEVPLNTTSS GGLGYITFTS
721 SEQTTLQVEN LTSITSVKVT ATVSKNIATR KTKTENQMFV MKVNKTIQNL DKQNYNLVYS
781 NLYGTRIEDR EISLGVSDCY RLHAVYESFD DADPVLPSVT IVEPTFFATG TIVTGATSKA
841 RAKVIDFASG SLKLSLVYLE GTFAAGETIS GVNSAGTAIT AIINDSAGSI IAGSKVVTDN
901 YYLEINQTGF IYDISKIVRK KGVAVPLRKL KVVIDYYTHS ATGDYFGGQS YLSTDYSDIP
961 FFEVKFMADY LDFRPGVRNL YTGTGTVSSP AYVQASTFDF NSRVFNVAGT PTATIFDVPK
1021 INTSMRCDFD WYLPRTDKAF ISPDGEFQIV KGKSAEAPLE PDDLKDGMLL AVINHKPYGF
1081 DPEADVAIVR SDNKRYTMRD IGGIERRLDQ VEYYTSLNLL ETDTYNTKII DADGKDRLKN
1141 GFIVDDFTDH SKSDTQNEDF NAALNFKQGY VRASHYTTNI GLEINDSLST NYQATGPLIT
1201 LPYTELKIID QPYASRVENI NPFNVFTYIG RIDLTPASDD WLDTERLPVQ VTQVEGDFQA
1261 VSSEMNVDQN GFAPIQWGAW RDQWTTERVI ASEVTRNPGW LEEDIGRSPL PDAWGGRGMR
1321 RVNRTDTIEV TTGQTRQGVR SRVIPRIDRR SLGDSIVSTT VIPWIRSRNV KFVVERLKPR
1381 TRVYAFFDGR SIDAYITPKI VELIKDPSTD NRTNSTPFVI GETVIGQTSG ARFRVASPNS
1441 VFAYNPYDDS VLPSSYASTT AILNIDLAAS ANQATGEFFG NFQVGEVIIG TSGAKAVIKD
1501 RRLISDRFGK LRGSFFIPPP NGIGNPRWRT GTRTMRLTTS EEDSRLAGAV DSSAEVEYEA
1561 KGTLNRVREN VLAVRNAEIV RDTVTQDRTV RSTRTETRQI GWYDPLAQSF IVDETGGVFI
1621 TSVDVYFNTK DTNIPVSMQI RTMENGYPTT SILPFSDVTK EPADIQISET GAVATKFTFR
1681 APVYIPQSIE HCFVLLSDSN SYKIWISRMG EIDITGDRTI SEQPYAGVLF KSQNASTWTA
1741 DQYEDLKFAI YRADFNNTAS SKLVLNNISL EEGNGGKLRL RRDPIQTFVP EIVLNMNSQV
1801 ATTPYTIGAR IYQKTSLAQG TISGILDTTQ GVQLTIKDIS GTFVQGTSST NGIVSSKTTA
1861 TITLASTSGY AIGDELTGGT SSATATVTSI TNSTTLVVNY ASKAFTNGET VTGDGAGGGT
1921 ASQQTTVPGS GTNFVPLGDA VSSGAIQVAF PDATPTYATT QRKIKVHHSN HAMHDPLNNV
1981 TIAGVESEVS PTYLTASISN SDTSLSVNDA TAFHKIINGS AISASNPGYA RIYNATSGLA
2041 ATFAEVVSYS AISTDGKTIT VHERGLNGTT ARSHADETVI ECYNLDGIPL TEINKTHTGI
2101 QNPTLDSYEI TTSSIGRLGI VSGGTNTVAT QNIQYEILVP QIERMLLPKT NLTARINTIS
2161 GTSINDGNTV NEASFSNDGI FSDIVLSEDN PLLAPSLICS GINESSELSG AKSFRMDLTL
2221 TSRVTTLSPV IDTDRMSITT VMNRINNPTN VNSAKLSVGD DHDAVYITRV ANLVNPSGSI
2281 KIYFSGYRPT GSEIKVLYRV RPVGSTDPIS KLGYEFFPTS GAKIPATTER ELYFEYEYEV
2341 SGLSFDQYQI KIVFVSPNQA YSPIVKDFRA IALAV
//