LOCUS AGF91298.1 1306 aa PRT HTG 26-FEB-2013
DEFINITION Cyanophage P-SS1 hypothetical protein protein.
ACCESSION JF974306-3
PROTEIN_ID AGF91298.1
SOURCE Cyanophage P-SS1
ORGANISM Cyanophage P-SS1
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; Kyanoviridae; Ronodorvirus; Ronodorvirus ssm4.
REFERENCE 1 (bases 1 to 178284)
AUTHORS Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q.,
Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S.,
Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE The Genome Sequence of Cyanophage P-SS1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 178284)
AUTHORS Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q.,
Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S.,
Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2010) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT This genome was sequenced by the Broad Institute and co-owned with
CAMERA.
##Metadata-START##
Isolation method :: double dilution series
Template preparation method :: lysate
Phage/virus type :: DNA:ds Viral DNA
Phage/virus "hybrid" information :: Not available
Phage/virus taxonomy :: Siphoviridae
Phage/virus strain :: Not available
Morphology :: Siphovirus
Latitude :: 38.10 N
Longitude :: 73.09 W
Depth (m) :: 60.00
Salinity (psu) :: 36.50
Temperature (C) :: 22.40
Collection date :: 12-Dec-2001
Sample collection site :: slope
Habitat description :: open ocean
Other metadata available :: Binder cruise
Lab Host :: Prochlorococcus marinus str.
MIT 9313
##Metadata-END##
* NOTE: This is a 'working draft' sequence. It currently
* consists of 2 contigs. The true order of the pieces
* is not known and their order in this sequence record is
* arbitrary. Gaps between the contigs are represented as
* runs of N, but the exact sizes of the gaps are unknown.
* This record will be updated with the finished sequence
* as soon as it is available and the accession number will
* be preserved.
* 1 150061: contig of 150061 bp in length
* 150062 150161: gap of unknown length
* 150162 178284: contig of 28123 bp in length.
FEATURES Qualifiers
source /organism="Cyanophage P-SS1"
/mol_type="genomic DNA"
/strain="P-SS1"
/isolation_source="slope"
/db_xref="taxon:889957"
/lab_host="Prochlorococcus marinus str. MIT 9313"
/lat_lon="38.10 N 73.09 W"
/collection_date="12-Dec-2001"
protein /locus_tag="CPYG_00003"
/note="similar to gp7"
/transl_table=11
BEGIN
1 MIAPTDNDFD IGGDRLYFNR QYIVEEATGL TSSEFNYTLN GVSYTAFSYP GTGRTEIVVQ
61 NNLKDILLAM ISDLQTGGQS STITAMETYL NASLQIQTIE DELLAFIFAI EQVGVIGEHA
121 LNNILQDFNS GFTLPTGYAA TKTDETAIRD SESPTTISNV ITRFRELIKI AVNFLSPAKL
181 AGRSAAKHVL YNYNYYKEEI TNQVNSQFGT GQWIYDQFLT NITDDMVHDI VATDLTDKTT
241 AYEITLTSNI GNYTVGEVIH SSNGAYAKVL EWNEDTTYLV VAPFVGTQWA NGNTIVGRTS
301 KAVGVVNTVA AGYDWYNKPT NVQTIAHART LTSNITGQIA GANLFSNPEA IASDWTATEA
361 TITNNSIAAP DLTITSEKIV PSTNLALHTL NRDFSLTAFE TFDSGVVKFD TTNESFDTGS
421 ISADANQTFT FSAFIKAGGY TSVRFQMSLD EGTSAVQRIF FDLNLSTGTI GSVFTPQGGM
481 SNDSAGVVPL GNGWYRAFIT TTFSFGFATL QNKIIINNAS GSQNYAGNGT DGIYVWGVKL
541 TKSALDPYQS GDGTVFYSDN EYNIKQYALN TLQTYMQAAL DNTLTEPSPN AGFYKFYDST
601 EAANYNTKSM SRIIRSNIDI IRNQIKTGTY YTQITSQNGI SVPTKLYGTR SLPVALGGGL
661 NNADYMYGLS SNVYGELESI AENSGKVVQV YQRFRIDGDI TDGPYTMNET VQKQGNASIN
721 GVVYGFFEDA NYKYLDVKVT AGPWAITDNV VGANNSTTAQ ISAIESRLHI IDLQGNFVDN
781 IPFKGYTSGN TAQPAGAFLK NEAAVTDNTG GTLTVDTATL NGTFETNSVV YPEASRQFLD
841 VIKYDGLELK VGAKIASTGN VRFGISIISS LATFQVGNRL YKIANGTQDL NTYAIITGVD
901 IANNFIYAQE FQGTLTNGDQ VGDYGVGSFP QGYANITTKV VTAGSASATI QDVKTVGTLK
961 RVYLSDVAGT FDVNDAIKSI DNYKAAISAK GDLKARVKRS FKGFDGVQTT FDLSQNNGTS
1021 YLPDPAGHLL IFINGILQPP GATNAYTAFS NQIQFTEAPE LGASFTGFYV GKLRQLDDIS
1081 FEFDSLRQSF NLKRNEVFYS LTLTDGVQSS SIRPENNIIC SLNGVIQEPG IGFEIVGSRI
1141 IFSEIPRVGS TFVAFSYVGS EADVDAAEIV PPVEPGDDIR IQGETEDRTV AVIESSNSLI
1201 TFDYLGSVFG QDAVATAALT TGFIKQVQVT GGGSGYTTRP TVRVDSISGF EGNIRALVGV
1261 GGVTLSNTGT GYQNPDIAVE TSVPDDWTAP DLSQYGEEVV DPEIIT
//