LOCUS AFM06334.1 807 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 penicillin-binding protein 1C protein. ACCESSION CP003345-3822 PROTEIN_ID AFM06334.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_4036" /note="PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C" /transl_table=11 /db_xref="InterPro:IPR001264" /db_xref="InterPro:IPR001460" /db_xref="InterPro:IPR009647" /db_xref="InterPro:IPR012338" BEGIN 1 MIKQFLKRFF KLSLKISIIG LLSTVILFFV FNYFFPFKLD ISYSQLILGR KGEIIYGFLS 61 KDDKWRFQTE LNEISPTLKE TILYKEDRYF YYHFGVNPFA VGRAAAKNIW TGRRTSGAST 121 ITMQVVRLLN PKSRTYFNKI IEMFRAFQLE FNYSKEEILQ LYLNLIPYGG NIEGVKSASL 181 LYFGQEPEKL SLAQITALTI VPNRPTTLGF STNSDKDYLI TTQKIIKERN KWLARFKKDD 241 LFKTETIKDA LEEPLDINFR KMSREAPHFS FFLHSKYPNQ NVLETTLDRT IQQKVEQITQ 301 NYTRRLDKLG IYNAAILVVD NQTKEIRAYI GSQDFYDSLH SGQVDGVQAY RSPGSTLKPL 361 IYGMAFDEGF LTPKQKLLDV PIDYDGYTPE NFDKNFNGEV SVEVALAYSL NVPAVNTLKE 421 LSVFKMVQKL SDAGFSQIEA DKHKLGLSLS LGGCGVSLEE MVGLFSAFST KGIFKKPHYL 481 KQNNTKTNKS SHSIAEDNFS FPLISEESAY MVSDILTKVE RPDFPSDYQN SKNVPKISWK 541 TGTSYGRRDA WSIGYNAHYT IGVWIGNFDG QSSKYLTGAQ VATPLLFQLF GSVDYAATNE 601 SIKPPKTLKQ RMVCSETGKV PSDFCTTLVN DFYIPTISQS DKCQHLKKIF VSNKEVKDKI 661 SYCSFCLPQD NSEYTTEYFP NIKPELTSYY LNRNLPIRSV PSHNPFCTHI FKDNNFPQIT 721 SLFENREYIL DDDSTQLLLE CRTASDISSV FWYVNDKFLK ESKPNERVFF NPFKFIVNQG 781 KNGKTKISCT DNKGRNTDIW IRLKRNF //