LOCUS AFM06307.1 1255 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-3795
PROTEIN_ID AFM06307.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_4007"
/transl_table=11
BEGIN
1 MITPNFLSYI NRKLKTGSLE YIHLNALPKN HATRLDAYQF NQIEEGLADK FIQELFEKQG
61 MRFTLSLTSL QNDNSPEIQS NFEKISKRLD TINHQNNDDY QEYGVRTFGF GYPLIVRRSK
121 QNPNKVIKAH LIIWRMYLEK SIHQINEWKI VRTEEDPILL NEVLINHLEQ EEKIVFKAAV
181 EEYLNEEVLT FTQLKSICNK IMERFNLENV EDFQDPRIEP IPTIDEDACT HFPNIIWSGV
241 FGLYRIQKEG IIQDIDYVIS HFNNFRFENL IPDPYQTSTL SSIDTDPSQE KILHSLAKKS
301 VRVIQGPPGT GKSQALTAII TNTIESGAKC LVVCEKKTAL DVIRQNLEDL GCGEFCISIE
361 DTTKDRRTVI AKVRNAAEQI EEYRHSFREK EYEIALNNYN QLKRDINRRH KAVLKKIFGD
421 DCWKDVVGKY MLSQRIGENI SLKPLLDRSE YSFDYEEFEL YTKKIKEGYY LFKQVAVEEH
481 PLNQLDEKIF QDIFLHTQRI EIEENLNCAI RESQDIIDVY INRKTVYGEE FKDNRVFRNN
541 SIMIFSFISR KHDQVKNFKQ EFLKQYQDFI DKQETMKYFE ADFPNKEGVE NFETLYKSIL
601 SYQEKAKAIL LGIDDFQEFY KWKHFITSLK KPQKNVFHAL IKTKSQDWVT TFESWYLDNV
661 LFKYEQEIGP FQQDDHLIEE LNQLTEKLKK TQVDKIISYW LSVQKTALEN FKLKGGNINT
721 LYNYKKNKQN KRKNSLRKII HTDFELFSSF FPVILVSPTV ASSILPMKEG LFEVVIFDEA
781 SQLRLEDTFS SYLRGNYRII SGDVHQTPPT NYFGRDILLD IDLEDKDTHE EAPLVIKPDS
841 RELADKESLL QFALDAGYEK SYLDFHYRSR HPFLIEFSNS AFYGSRLMLM PERFAYKPIR
901 FLQADGVYDT NRTNLTEAKM IVDILFGHIC ENNYGECPTI GIATFNIEQR NLILELIQKT
961 CQGNKQLLKR YEKIKEDGFF VKNLENMQGD ERDIILISTT FGKNEDGKFK QYFGPLNLSK
1021 GYRLLNVLVT RAKYQVYVCT SIPPEYYNRY AKELATRGNT GRAILYAYLA YAHAIEENES
1081 KKRKLILELL EKYCLEGQRF EKVKHINSAF KEELYHRLSE QFGEERIEAE YQFGGLKLDF
1141 VIKAHKGGKP ILAIECDGAA HHTTEEAYIH DIYRGKIITE RMKIHYYRVW TTNWWINAKK
1201 EMKNLVDFVN SIDEDKLPKN SLSMMSAMEE FVDRPLNLES IGENLSKIKL DEKEE
//