LOCUS AFM06276.1 1271 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-3764
PROTEIN_ID AFM06276.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_3974"
/transl_table=11
BEGIN
1 MRFLLLLLPF LAIISTKTVF AQTDKNDTKN DSLNSTFQKI KWIAVQKKNN SAVVGVPTND
61 HYTPYTAFWT KEIDSLPPIS IQVLQTRPAL SSVVGVPTNN TNAIKATYDF EKQIILFDSI
121 SNQTIQLDSI QISYQSIPFK IKNWNFKRSQ EEYEQAAMQN FIDTVDRKAE KKKIITEERQ
181 ELFSSNLQKS GSITRGVSVG NQQDVFVNSN LNLQLEGKLT DEIELTAIIS DQNVPFQPEG
241 NTQQIQQFDR IQIQLRHKNA SLTAGDVTLK QGIGNNSPHF MRFYKNVLGG VLQTNFQRDS
301 TFSTQQKISL AAAKGQFQSY QLPVQEGVQG AYRLVGANNE SFIIVQAGSE KVFLDGQLLQ
361 RGFNYDYIID YNTAEITFNP HVVITQFSRV RVEFEYTNQY YNRTISNLGA SVNFTSKNKS
421 LNPNKLKKSS WNVFIENYSE SDNEKQPINF DISEERQTLL ENIGDSLSLA VVESAEEAEG
481 FSINQILYIK KDTLINSFVY PIFVRATQDD ENQTLYTISF SEVEQNQGDY SLGETLANGN
541 EYVFVGINQG NYAPIRQLPA PNSKELTNAG IRFSPNKHTS IFAETAFSKQ DKNLFSEINS
601 EDDQGNAFFI GIHTKEKIVQ NKYKLSYGID YEIDNKNFEP IDRFRDIEFD RDWTLPTFYG
661 SLPNGKDQIL QAFAIIENNQ SNKFEYHFTY REREDAITGQ QHKILFNKKI GKLQLSTNGF
721 LLTGENKLEY SNSAASSYSD LTSTTSSENS IISSIPSSQV SILSIPQTVF WLRYDADLKY
781 QNRFIIPAYS YSIDKQEFRQ NIFSSITNQK QDSVTSSLIN YEQHKFYLFQ GDSSKKANYK
841 VEYILREDFL PKNGNIQSYT NSQTAQAEAT LNFEREKSTQ KLTWNATYRN LKYNQEFLDT
901 IKLENTETLM GRIDWRSDFF ERAIHQELTY STVTGREPAL EFTFIGVDGT QGTHTWRDDN
961 NDGVQQLGEF YEAINADERN YIKIFTPTST YLTAFSTDFV YKITLTPPRK WKKAKFIKKS
1021 LQLFSLVFSV QNSVKTTEND FAKRFIPFAE RSQENILSEQ SSLRNVLFLN RTNPKWGGEF
1081 RYTSTRQKTL LAGGFDSQNI EEYEGIFRLS LSKTIASKSS FLIGKQNNAS DYLENRTYDL
1141 ELIKPQIELS WQPTTAFRLT TAYRFENKKN TLGIEKATIN EFRTELRYSK VGDRVFNLRL
1201 RTLNIDFTGE TNTPVSYELL EALQAGQNLT WDLSLQQKLF NGLQLSVVYE GRKSGSNAAV
1261 HIGRIQVTAL F
//