LOCUS AFM06244.1 729 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 ATP-dependent DNA helicase RecQ protein. ACCESSION CP003345-3732 PROTEIN_ID AFM06244.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3941" /EC_number="3.6.1.-" /note="PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family" /transl_table=11 /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR002121" /db_xref="InterPro:IPR004589" /db_xref="InterPro:IPR010997" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014021" /db_xref="InterPro:IPR018982" BEGIN 1 MIEQKINLKK TLKEVFGYNQ FRGNQETIIQ NLLDGKNTFV IMPTGAGKSL CYQLPAIVRE 61 GTAIVISPLI ALMKNQVDQL NAVGINASFL NSTLSKSESN KVKKSVLAGN TKLLYVAPES 121 LTKPENLDFL AKANLSFIAI DEAHCISEWG HDFRPEYRRI RFIVDSLGDL PIIALTATAT 181 PKVQQDIQKN LHMEDANVFK TSFNRQNLYY EVRPKTNVKK QLIKYLKGKK GQSGIIYCLS 241 RKKVEEIHEF LKVNDIKSRP YHAGLDSSIR MQNQDAFLNE EVDIIVATIA FGMGIDKPDV 301 RCVIHYDAPK SLEGYYQETG RAGRDGLNAD CIMFYSPEDI HKLEKFNKDK PVTERDNARY 361 LLQEMADYAT SGVCRRRQLL HYFGENVEKD GGFNDNTDKP KPKFEANQQT EWVLKAVKET 421 EERFTISHIA DVLMGKETDY VKSYGHNKVS VFGKGKDQTQ QYWRSIIRQV LLFNYLKKDF 481 DNHGVVKLND KGRDFLKNPK SHKVMLTEDH DFSKITAEDE EKEIGGTAQD KGHDPVLFDL 541 LKKLRKKLAK EKGFPPYVIF QDPSLEEMAT VYPTTNDELA QINGVGMAKV DKFGKAFLDA 601 INKYVEENDI ETDAEVLVKQ TANKSKVKIF IIQQIDRMID LEEIADAKGM KVGALISEIE 661 HICYSGTKLN IDYYIDKIMD YDRQDEIYDY FMNAETDSIQ VALDEFEEDE YGEDELRLMR 721 IKFLSEYAM //