LOCUS AFM06179.1 1267 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 type I restriction-modification system methyltransferase subunit protein. ACCESSION CP003345-3667 PROTEIN_ID AFM06179.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3874" /note="PFAM: N-6 DNA Methylase" /transl_table=11 /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002296" /db_xref="InterPro:IPR003356" BEGIN 1 MNIITKPSKV LNPAYRKINV TRNEINNFKS ALNVCLEHIR ISEEKNESEE NIKKYVGDFL 61 HQAFYQNYLI NTKDKIDLAI YAGKDATSNI SVLIEAKRPS NKSEFLKIDN LNRKALQELL 121 LYYLRERVTL ENNQIKYLIA TNGNEWYFFK GEDFYNTFYK NKKLLKEYNE FISGQKDSSK 181 NELFYNEIAK KYIEEVKDEL PFLYIDIKKD FQEFLSIENT DDDKLVSLYK VFSPIHLLAQ 241 SYGNDSNQLN KEFYYELLHI IGLEEVKEKG KKVIQRKEKG TRNEGSLLET TIFILDDRDY 301 LRKVENLKTY GQDKEEQLFN VALELCLTWI NRILFLKLLE SQLVVYNQDS KYKFLNTDFI 361 TGYDDLEELF FSALAKKIED RNERIKEKYN HIPYLNSSLF EPNELEDKAL QISNLKEIDL 421 ELYDKTVLKN NLKRLTGGLP TLEYIFRFLE AYDFSGEKGE QVDESNQAKT LISASVLGLI 481 FEKINGYKDG SFYTPAYITM YMAKEALRRA VVQKFNTHYT WKCSDFEQLK EDLKDYIRNG 541 DREIIRKEAN KIINSLKICD PAVGSGHFLV SALNELIAIK SELGVLIDKD GKRLNAYIQI 601 DNDELIIEDE NEEIFTYKPK NKTSQRLQET LFHEKQSLIE SCLFGVDINP NSVKICRLRL 661 WIELLKNAYY TQENQLQTLP NIDINIKTGN SLISRFELDE DLKNAFKSKD NPYSLNDYKN 721 AVQEYKNTNN KERKREIIKI IDTIKSAFTG TLDGKFKKKI ASARGKLEQK QTEVQNLEAF 781 GEKISKKLSL ELKKLKLALN KAQDEKEGLL NNVIYQNAFE WRFEFPEVLN KKGEFVGFDV 841 VIGNPPYGYS FLSVKEKNIF KIQYDSVHQK MFEVSTYFTK RGYDIIKKEG SIAFICPNNL 901 IFQLTFEKFR NFLLESTIIN TVINLGDKVF DEADVPTCIF IVTKGLNNQN EFIYGDIRKN 961 ESIKIDGFQS FNQYQKYNQN DLKLGDGLVF GIPQNLSKLI VKVSEKSIRI DELANTVSYG 1021 ISSGGDSIFR IKDDKVEEYQ IEEKLLHKVV SGGNIVRYRI NYEQEFIIYT VKSTKIEDYK 1081 NTLKYLEPYE TKLSNKRETK KGTLPWWCLH WPRNVNLYSS PKIILRQTAD TIIASLDNEG 1141 YFVMDSVMII KIDNKEKYPL LLGILNSKLN QFIYKTITQE TGRVFAQVKP ANVRKLFFPL 1201 NISIAIQAQL TELINQILSS KKQNPNTDTS DYENEIDILV YKLYDLSYEE VLLIDSDFGL 1261 SEEEYNK //