LOCUS AFM06111.1 1208 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 aminopeptidase N protein.
ACCESSION CP003345-3599
PROTEIN_ID AFM06111.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_3804"
/note="PFAM: Peptidase family M1"
/transl_table=11
/db_xref="InterPro:IPR001930"
/db_xref="InterPro:IPR014782"
BEGIN
1 MLLEIIRFEL KYRLKRPATY LYFGILFLLT LVAMTSDFVQ IGGAAGQVKI NAPVTLANTI
61 LIITAFFSMI VSAIMGVGVL RDFEHKTHSM LFTTPITKRD YLFGRFIGSF IILIFVFSGA
121 FFGMTLGYLK SFSEPDRFLA FNLWHYLQPF LLFGVTNLFI SGTIMFAGGA LSRKMLVVYT
181 QGILLLVLYI VALQLSSSLE YKDIVAWLDP FGISAFRRQT EYWSIAEQNS QTAQLTGFVL
241 YNRLLWLGIA IVSLFVLYKG FAFRVVRQSL FKPKAEIKTV ATPIAITNLP KVKLNFGFGA
301 TIQHLFKLTT FYFKNLFKEV PFLAIVIAGM LMTFSASLEM NRLYGAYSFP TTYSVIELIQ
361 DNFTLFFLII AVFYTGELVW KEREAKMDLI IDALPTQTWI GIISKFFALI LSYSVLIVML
421 IFTGVLIQTF KGYYNYELGL YFKTMFSDTL SMLVIYTLLG LFIQVMVNNK FIGFATMIII
481 FIVDGLLQYM DVEHPLFHFG SGMNLGTYSD MNSFGHFVTP FSWMSAYWIM FSVALLFMAV
541 YFSVRGTETN LKTRFTIGKY RINKTWIAGF MVSLVAVVFL GSFAFYNTNL LNEYKNSKQQ
601 EEVSVNYEKE LKKYKDVELP KITAANLKVD IYPEDRDVTV EGYFTLKNKT NKPISDIHIQ
661 KGDRGNIKTE YLKFSKEVGL KENFKEFDYE IYTLAKPLQP NETVNLNFKM VLETEGFVTR
721 GSNTNVVQNG TFFNNGFFPS LGYNESYEMG NEDKRKEYDL PEKERMPARE EEKFHSHNLF
781 GNDADMIDFE IILSTSPDQI AISPGYLQKE WIENDRRYFH YKMDAPMANF YAMQSGIYEV
841 MRDKWISKAD TSGNKKEVAL EIYYHEKHTA NLDRMMNGMK DALGYFSENF GDYQHRQLRI
901 IEFPRYNSFA QSFANTIPYS EEIGFMLDME SDDIDMNYYV TAHETAHQWW GHQVTEAPVQ
961 GSTMLSETLS QYSALMVMKH KYPKEMVQKF LIYELNSYLR GRNREKRKEL PLDLVEGQQY
1021 IHYRKGSLVM YALQDYIGEE KINLALKNYL NKWKFSEGNY PTTTDLTNEI KAVTPDSLQY
1081 LITDLVESIT FYENKTEKAT YKDLGNDMYE VTLEFSSEKT KADSLGIETK MPLTEWIDIG
1141 VYGEEPTEKN AEGYKFAPLL YLEKHQITKE NSTIKVKVKG KPVKAGIDPL NKLIDKHPDD
1201 NVQNVEKE
//