LOCUS AFM06009.1 812 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 outer membrane receptor
protein protein.
ACCESSION CP003345-3497
PROTEIN_ID AFM06009.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_3696"
/note="PFAM: TonB-dependent Receptor Plug Domain; TonB
dependent receptor; Bacterial Ig-like domain (group 1)"
/transl_table=11
/db_xref="InterPro:IPR000531"
/db_xref="InterPro:IPR003344"
/db_xref="InterPro:IPR010917"
/db_xref="InterPro:IPR012910"
/db_xref="InterPro:IPR014766"
BEGIN
1 MKNLSLSLYL VFAFSLLFSF SFSTFSFAQN TDTYSISGTV KDTKGENLIG ATVLLNFNNG
61 SFSKGTITNL NGEFSISNLS SQVGEYTLKV SYIGYQTTEK AIDLSANTVL DIVLPSGKTL
121 SEIVIKSYRE YPVTLTELNE KEIEKRNLGQ DLPILLQYTP SVVSTSDAGA GVGYTGMRIR
181 GSDATRTNVT VNGIPMNDAE SQGTFWVNMP DFASSASSVQ IQRGVGTSVN GAGAFGASVN
241 IATQEPQDEA GAEISNSFGS FNTFRHNVQF HTGLLKDRIK FSGRLSKITS DGFIDEAFSD
301 LKSYFVSGVY QNKVGTSIKL NMFGGREQTF QAWNGVPQEI LDEGNRTYNE LAGYDNEIDN
361 YGQDHYQFIF DQKINQNLTA NIALHYTRGK GYFEQFKSDE DFSDYGLEEI VFNDSVTINT
421 TDLIRRRWLD NHFYGTVFNL NYESSQTKGN ESTLTAIIGG GYNIYEGGHY GEIIWAQYAS
481 NSSIRQKYYD NDATKKDFNV FAKVNYQVVE NLFAFADLQI RSIDYDFLGF DNDLSNIEQN
541 ASLSFFNPKF GLTYKLDNHR FYGSWARANR EPNRDDFTES TPTTRPDAER LDNIELGWNG
601 RFEKLTLSAN YYLMSYTDQL ILTGQVNDVG SYTRQNVDKS SRTGVEIVAN YDFSKKFSWS
661 ANATFSQNKI KAFSEYLDDY DNGGQVEINY GETDIAFSPS IIAANTFSFH PVDGFSINLL
721 SKYVSEQFLD NTSTDTRKLD AYFVNDLQLV YNFSYKYFKN IEVNLLVNNI LSEEYESNGY
781 TYGYIYGGET TRQNYFYPQA GRNFLVGLKL NF
//