LOCUS AFM06006.1 947 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 2-oxoglutarate dehydrogenase, E1 component protein. ACCESSION CP003345-3494 PROTEIN_ID AFM06006.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3692" /note="PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component" /transl_table=11 /db_xref="InterPro:IPR001017" /db_xref="InterPro:IPR005475" /db_xref="InterPro:IPR011603" BEGIN 1 MDKLSYLSNA ENSYIEGLYQ DYQKDANSVD ASWQRFFEGF EFSMSDYDTE TGEVTKNNKS 61 SNGHVAETAN QKSFADSLPE GLDEDKLKQE ISVKKLIDGY RLRGHLEAKT NPVRPRRDRH 121 ARLKLEDFGF TEADLNKKFR AGNEIGIGEA TLQEIIDRLK MIYESGIGFE FMAIREPDVK 181 YWFRKKVEVD YPKFKLDHQQ KERILQKLNE ASVFENFLHT KYLGQKRFSL EGGESTIPAL 241 DAIINEGAKL GVEEVVIGMA HRGRLNVLVN IMGKTYAQVF NEFEGNVSDE LLGLGDGDVK 301 YHMGYSSQVT TPEGKNVYLR LAPNPSHLEA VAPVVQGYTR AKLDYLHGKD KKKALPIIIH 361 GDAALAGQGI VYEVAQMSEL EGYTVGGTIH FVINNQVGFT TDFYDGRSSN YCTDISQLTE 421 TPEIHVNGDD PEAVVFAVQL ATEYRQKFHK DIYIDMVCYR RYGHNEADEP KFTQPQLYNL 481 IGKHPNPRKL YTEKLTKEGE ITSKLAKDME KSFKKLLQER LDEVRQKPLP YEYQELEQAW 541 KNMRRSTPED FDVSPKTSIT QDQIDKVGKA LITIPKDFTP LKQINKLLST REKMFFEDKV 601 LDWAGAELLA YGSTILDGHT VRFTGQDVRR GTFSHRHAVL SDAETNEKYN NLNHLGTEKE 661 DLPKFEIFNS LLSEYGVLGF EFGYAMANPN ALTIWEAQFG DFANGAQIMI DQFITSSETK 721 WQRTTGLVLL LPHGYEGQGP EHSNARPERF LQLSAEYNII VANVTKPANF FHLMRRQMAW 781 NFRKPCVLMS PKSLLRHPKV ISPIEDFTDG KFEEVYGDDY VDAKKVKRVL LCSGKIYYDL 841 LDRQEKDERK DVAIVRVEQL HPFPKKRIYE EINKYKKNVE VIWVQEEPEN MGAWLFVLRM 901 LYKEWIEEKR PTLNVISRKA SSSPATGYSK VHAKTQLAIV DESFDVK //