LOCUS AFM05996.1 1886 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-3484
PROTEIN_ID AFM05996.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_3682"
/note="TIGRFAM: delta-60 repeat domain; Por secretion
system C-terminal sorting domain"
/transl_table=11
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR008957"
/db_xref="InterPro:IPR013783"
BEGIN
1 MSNFKTNLYR LFSVCIILLL SNFYSNSAWG QCNPAASDPN FNPNDTGFGF GQGNVSGINK
61 FVVMDDNKII VIGSADTYNN QPVDNLYRLN EDGTLDNSFT LFSATPYTNA SLSDIELLPN
121 QQLLVSGNLF DATNQGKYII RINPDGSVDN SFSVTGLEAT SNVRNLVVQP DGKIIVIGFL
181 QVAGLDKDII RLNTDGSIDT SFIMGHADDT LSHYNYGTLT SATLQNDGKI IIIGDFNQYN
241 TINKKNIVRL NTDGTIDNSF LTLVTGSIGL DGINNVAIQQ PSGKIIVTGN FEELNGTAIG
301 GNIARLNLDG SLDASFIQGV GFSWYTDRVN FQSDGKMIVA GSFSSYNGAT VYNLARLNAD
361 GALDNSFSVR NIKRSQGYLV ELANGKFLTT LNVSESGIDR LNADGSHDDT FNPNTGFNNT
421 ILQTASLPNG QFYASGFQMG KYNGVATGAV AKLNTDGSLD PTFNYDSNQL GSGILVHISY
481 HTSLTTQPDG KLLVGTITIV PSNTNESVKL FRLNTDGTLD NTFVVEGEFA TSLTAGMVGK
541 VIVQDNGKII ISGTTNITGT NRDFKLVRLN SNGSLDASFP EITTNGSISD MILLPDGKIL
601 VAGGFSSLNG NPVNKLARLL PNGTIDNTFY TDLDLHSVTD IDTLNNEIYV SGEFDNGSAA
661 FVGAIRKVSS TGVMNPTFDV ILTGNGATVP SANILVESNG KMILAGEFDQ VNGVSQKNLA
721 KLNADGSLVS NFDVGTSTDG RIYNAFLQPD NTIIIAGDFV SYDGTGRNRI AKITNTSVLV
781 TNTTPINQQT GLCQGNPTTL TATGLGTLYW YDSPTSTTPI QTGASFTTPS ITQDSTYFYV
841 LDSIASCGAS DRLEILVKAS PSLEAVSKPN YIFYLDANGQ AELQASELDS ASTGGCTGAI
901 ASLLFDDTGL ATRTFDCGDT TGVHNLVLRV TDSNGNTDTS PSIVKIKDAI APTLTTQSIN
961 IAFDASNTAT ISALDFVTSL NDNCSDSANI NVVFSDTRTQ TRVLNCASDS INYFDLHTTD
1021 LAGNTVITPV FVAVTAVTHD FNVNVVAQNF RPNQVSYISV YVNNNSCATK SGQVKLTLPA
1081 STQYDPTYTI DVIPPDNIVG NDLFWNITDL NFAQNFVGRV VLRANNSINI GDNVCFTTSA
1141 TPTLNDYNLA NNTKNHCFPV VNSYDPNDKQ VYPQGICDEK FTQRSDLPLT YTIRFQNTGN
1201 APALNVNIVD SLSNLLDIHS LRVIGSSHAM EVDTLANNTL NFRFDDINLP DSSSNPALSQ
1261 GYVIFELSEI AAHTDTSRIE NRSFIYFDTN APIITNTVKN TILDVVPLCD PAGGGSNPPI
1321 ADCQLPTNLR TEILTSTKVK LLWNTPATTN AINYEVLRNG QRLATIPSSN LSFVDSTLTE
1381 NTHYNYSIKA ICGNNTAISN IVQVRTLPST PVLLSLEPAC KGESGIIEVR SAGAVYRVYD
1441 SEIATTPLFE TNNASIETPV LNDSTTFYIS VIISGQESER LEVLVPIKEV FEAVVEQGSL
1501 LESCATDFTL SAQEVEGATY TWFRENIQVG TERTLTTTFE ARYKVVVIKN GCSDESEFTT
1561 TRFVDAPTAK IEQGNSITFC GSGILNAQDT SSNVSYEWTL NGNTLGNGTS ISISESGTYT
1621 LKASQPSCAD SVNIAVTITS APTNVNLTAD KTAICLSEET TLSATTGTGF TYKWFRNNTV
1681 ISTTSASFST SEIGTYKVEI TTQDGCEVTT SEVEITRLQV NQASIRINTE NGKDKTIDIA
1741 SQDAIDSVKW FKDGVEIIDF ANQNLITPTE TGNYKAIVIY STGCSFETEE KIFTVNSITG
1801 IEEESAKIFT IYPNPNTGSF KVEFATTTNQ KTNLVLIDGL GRTIHSQAIS MNEKTTSITL
1861 PKISAGVYVV QIVSEGKVYT KQLIIQ
//