LOCUS AFM05981.1 1426 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 surface protein 26-residue repeat-containing protein protein. ACCESSION CP003345-3469 PROTEIN_ID AFM05981.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3666" /note="PFAM: Mycoplasma protein of unknown function, DUF285; TIGRFAM: Por secretion system C-terminal sorting domain; bacterial surface protein 26-residue repeat" /transl_table=11 /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR005046" /db_xref="InterPro:IPR008957" /db_xref="InterPro:IPR013783" BEGIN 1 MMEMFDGVIS FNHDIGRWDV SAVTSMSSMF SGATSFNQDI GNWNTASVTG MSFMFHRATS 61 FNQDIGNWNT ASVLDMGVMF FAAASFNQDI GNWNIANVRN MSSMFFAAAS FNQDISNWNT 121 QNVGYMDDMF RGARSFDQNI GNWNTQNVTR MNGMFSGATA FNQNIGRWRI DSVTNMSNML 181 VFSGLNTSNY DSTLIGWAAQ NVQPNVSLGA NRLIYCSSIA ERNALITSKN WDITGDLMGG 241 QSVDNVTLPQ NQYVVCANTS TTLEVNGSGT ITWYNSPTGN VSIHTGSSFI TPILTADSTY 301 FYVQDSVAGC GTSNRIEIVV TTSSIDNSTP PQNQYGVCLN GTTVLEVAGQ GTVYWYDSPT 361 NTTPLHIGNS LTTPILTADS TYFYALDSIV GCGSNNRLEM LVTTQSLSAV SKTNYTAYLN 421 NLGQIEVDAV LLDSISTAAC GNTIDSYLFD DTGLATRSFS CADTSAVHNV VLRVTDNNGN 481 TGTSPTIIHI KDTIPPVFTT RILPVLFNSS NQATILARDF LTSLSDNCTD STNINVVFND 541 TGLETTSFDC GNRIRTNTDL RITDQAGNRV IQPVMIIPSA TNYDFNVNII GATFRPAIVS 601 TVTVFANNYS CVPKSGELKI TLPSTVFYNS ASITPSRIVG NDLFWNVGDL SFNRTFVVRI 661 NVTPYFNLNI GNELCFAGYI TPETNDFYRL NNLKQYCFPI VNSYDPNDKQ VYPQGICDAK 721 FTKRSDLPLT YTIRFQNTGN APALNVRIAD SLSSLLNRRS LRVVGTSHPM VVDTTANNNV 781 INFKFNNINL PDSTSSPELS QGYVIFELDE IEAHTDTSRI ENKSYIYFDT NAPIITNTVK 841 NTIVNTLPLC NPAGGSNPPI ADCTLPTNLS TEILTSTRVK LLWTAPTNTN AVNYEVLRNG 901 QRLATIPASN LFYIDSTLTA NTRYNYSIKA ICGNNTATSN SVQVRTIPAT PTLFSVVAAC 961 KGEKGIIEVR SSGAVYRVYD SETGTTPLFE TNNASIETPI LNDSTTFYIS VVTSGQESER 1021 LEVVVPIKEV FDAIVEQGSL LESCATEFVL SAQEVQGATY TWFRENVEVG TERTLTTTFE 1081 ARYKVRVVKN GCFDDSEFTT TRFVSAPTAK IEQGNSVSFC ETGTLNAQNT STNVTYSWIL 1141 NGNNVGNGTS ISVSESGTYT LKASQPSCAD SVTIAVTITT APTNVVLTAD KTAICTDAQT 1201 TLSATNGTGF TYKWFKNNTA ISNTSATLST SEIGNYKVEI TTQDGCKVTT SEVEITRLQV 1261 NQAFLRVNTE SGKDKTIDVT SQDAIDSVKW FKDGVEILAF ANQNLITPTE TGNYKAIVIY 1321 STGCAFETEA KTFTVGGITG IEEESAKIFT IYPNPNNGSF KVEFVTTTNQ KTNLVLVDGL 1381 GRTIHRQAIL MNEKTTSITL PKISAGVYVV QIVSEGKVYT KQLIIQ //