LOCUS AFM05933.1 1156 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 pyruvate carboxylase protein. ACCESSION CP003345-3421 PROTEIN_ID AFM05933.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3616" /note="PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; HMGL-like; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin-requiring enzyme; Conserved carboxylase domain; TIGRFAM: pyruvate carboxylase" /transl_table=11 /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR003379" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="InterPro:IPR005930" /db_xref="InterPro:IPR011053" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011764" /db_xref="InterPro:IPR013785" /db_xref="InterPro:IPR013815" /db_xref="InterPro:IPR013816" /db_xref="InterPro:IPR013817" /db_xref="InterPro:IPR016185" BEGIN 1 MINMETKNIK KLDRILIANR GEIAIRIFRA ASELNIQTVA IYTYEDRYSL HRYKADEAYQ 61 IGAEDDPLKP YLDIEEIIAL AKAKKIDAIH PGYGFLSENV HFAERCREEG IIFVGPLPEV 121 MNQLGDKVAA KIVARRALVP VIEDSKDPLS SAEVAVKEAT RIGYPVIIKA AGGGGGRGMR 181 VCHDEPTLIK SFKEAKSEAK KAFNDDRIFL EKYIDNPKHI EVQIMADNYG RTVHLFERDC 241 SVQRRFQKVV EVAPSMTLSE TTRYALYDYA LSIAKEVKYN NVGTVEFLVD ADENIYFIEV 301 NPRVQVEHTI TEEVTGIDIV RTQILIAQGY PLTDKRIYIN SQADIPCKGF AIQCRITTED 361 PANNFKPDFG LIVAYRSADG YGIRLDAGNC YTGARISPFF DPMLIKVSAK GRTLWGAATR 421 LHRALREFRI RGVKTNIDFL LNVISHPEFQ RGEATVKFID NHPELFEMPR RLDRGTKILR 481 YIAETTVNGN DSVKKVDPTK TFRTPIIPSF DKKYLESFPK GTKDKLNELG REEFCKWLKE 541 DKAIHYTDTT LRDAHQSLLA TRVRPYDMLS VTESFAKNHP EVFSLEVWGG ATFDVSMRFL 601 HEDPWERLKN IRKAAPNILL QMLLRGSNAV GYKAYPDNLV IKFIEEAAEN GIDIFRVFDS 661 LNWVDAMKVS IKTIRENTNA LAEACICYTG DIITNPTGKY NLEYYLDLAK KLEDEGAHIL 721 AIKDMAGLLR PYAAELLISK LKETVQIPIH LHTHDTSSIQ SATYLKAIEA GVDVVDVALA 781 SMSGLTSQPS FNSVVAAMEQ QEREQKIYLP KLNEYSNYWE DIREYYYPFE SDLKAGTAEV 841 YENEIPGGQY SNLRPQAESL GLGDKFQEVK KNYAIANELF GDLIKVTPSS KVVGDFALFM 901 TANGYTKADI LEKGETMSFP ESIKDMMRGD LGQVQGGFPK KIQKIILKKE KPFTERPNAH 961 LEPIDWEKEW KEFKKEFKNA NELDLLSYLL YPKVFADFYN TTQEFGDVSI LPTKIFFYGL 1021 QPNEEIMVDI AEGKTLIIKL RSISQPDEDG MKTVTFDMNG QIRRVRVLDK SLNITKISNQ 1081 KASATEDGEI GSPLQGKIAE VLVKEGDSVK TGDSLFVIEA MKMETTVSTP KAGKVKQIVL 1141 ANGSMVEQDD LVILVE //