LOCUS AFM05922.1 992 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 type I restriction-modification system methyltransferase subunit protein. ACCESSION CP003345-3410 PROTEIN_ID AFM05922.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3605" /note="PFAM: N-6 DNA Methylase" /transl_table=11 /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002296" /db_xref="InterPro:IPR003356" BEGIN 1 MSLFQKSVLK NYIKFLPKEK VEAAWQAFSA HFQNPIIQEN IRASKEEEYQ EGFLNDFFVN 61 VFGYVKKPNV SYNLTTELKN VKNAKKTDGA LLRSDGNPFA VIELKGMDTT DLTKVEAQAF 121 GYKNNQYNCT YVIISNFEKL RFYIDNAIDF EEFNLFTITR ERFEVLYFCL SLQTLLVDDK 181 PKKAKEETLN REEEITKKLY NDYADFRNTL FKNIQLLNPE YDKLTLFKKT QKLLDRFLFI 241 FFAEDKGLLD TKLIAYIIDE WREINEKHGI PTSLYDKYKR YFHFLYTGKK SRYHNIFPYN 301 GGLFKTDELL DSLKIDDALL ARHTLKISEY DFDSDVSVNI LGHIFEHSLN DFEEIQAEIE 361 GKELEKTNTR RKKDGVFYTP KYITKYIVDN TVGKLCQDKK QELELLEQEL EKNYEVENGK 421 PIKNKKKREE LHQKIEDYKK WVSELTICDP ACGSGAFLNQ VLEFLIAEHH YIYELELKFI 481 GTALIDKELE NKILKNNIFG VDINEESVEI AKLSLWLRTA YKGRKLTTLN DNIKCGNSLI 541 DDPKIAGQKA FNWKNEFPSI FEKGGFDVVV GNPPYGAKLS KEHQNYLNEK YIKGGSETVI 601 SFLKLSYELL KSKRYLSFII PKSFSFSSNY KYIRKFLIED IFEIVDCKRV WTEVKLEQVI 661 VSFLKNNNSK SYSSLVREDK SILEVGTIQK TDVELFDFYL NGISNEELQI GKKLLETEQF 721 LNDIATNNRG GIFQKLITDK GNTEVLGGAE IQRYGIVGIK GKVNKTAVQD NDRVFINSNS 781 VLVQNIIAHI TQPTDHIKIT ACLPSENTNY VIVDTINQIT LNSDYEDKFI WVLLNSPLIN 841 WYSYRFIFGK AIRTMHFDNA VTSRIPIPKI TKEAQKPFIE LANKMLSLNE DFAAKKNRFL 901 RRLEENFKLD KLSKKLDSFY DFDFSVHKAE LKKKKIELSF KQQDEWQDYF EDYKKDLLAL 961 QSQIQSTDNQ IDNLVFELYG LTEEEIKLIQ ES //