LOCUS AFM05902.1 1134 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 putative periplasmic ligand-
binding sensor domain protein protein.
ACCESSION CP003345-3390
PROTEIN_ID AFM05902.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_3584"
/note="PFAM: Y_Y_Y domain; Two component regulator
propeller; Stage II sporulation protein E (SpoIIE)"
/transl_table=11
/db_xref="InterPro:IPR010822"
/db_xref="InterPro:IPR011042"
/db_xref="InterPro:IPR011110"
/db_xref="InterPro:IPR011123"
BEGIN
1 MHFFSLQKRN CKLLNTNNLF SFSTTTLHRF LFSLTFVVYF AASYFVSFSY AQDIRFSAIT
61 TAEGLSQNTI TALIQDKQGF LWIGTPDGLH RYDGYSLVES KNLPNDSTSL INNSVTALVE
121 DKNGDIWVGT EKGISKWIRN QNTFEQIKFN QIGAIPHTQI QSLFKDDKNN IWVGSKEGLS
181 FYKDDKDEWI HFASNNQKLV ALKNLSVAAI TQDGKGNIWI GSDSLGLYKI ALAQTNEQVT
241 HFDIKNGLLD IHITSLASDT TTNTLWIGTI KGLQALHLDE INNQNEDNTK LFTSFINHQN
301 DIHSISGNHI TGLLVDRSGQ LWVGTASQGI NKYLNTKAGF IRHQKDVYNP FSLSDNTGIK
361 VLFQDRTGVF WFGTAQGGLN KYDPEKIKFR LYRSVNDLRQ NGIQDNNITC FFKDDEGKTW
421 IGTKKAGIFR YNPKIANGWF TQYSRYSHGM PSDDVTGITQ DLYGTTWCST RDRGVGRFSY
481 KNGNLTIIQY KKHWEGLPSS RIAKLFTDKK GEIWVLTFEG DLCKYSRALN DFEVKVEGEP
541 NLTDNEIMLS AKSTNKNTIW VGTPTGAYLY DVTTEKIILD KRNDLKVWVS SIEEIGDSSV
601 WFSSSKGLIR YLPQKDSLTY FSRKDGLTTD MIYSVVLGED KNLWLSTNKG ISRFSLKTLK
661 AKSYDETNGL QGQDFLAGSY YKSNEGELFF GGKDGYNAFF PTEIKDDPLT PQIVFTEIDI
721 FSKSLPFIDF ITRVENPLDS YILTADSLTL DYEKTGFSLE FAALHFSDPK KNAYAYKMEG
781 LDEEWTYVNA GRRFVNYPTL PYGNYVFRVK AANSDEVWNE EGTALYINVS TPVWERLWFR
841 ILGILMIVGI ISAFYMARIR RSKNQQKLLE LQVEERTKEL QEKNKNMTDS LRYAKTIQTA
901 ILPPETDLKE CLTEVFTVYE PLEIVSGDFY WFKNIDNIVY IAVADCTGHG VPGAFMSMIG
961 SSILSDMVQQ NKELKPCETL ELLNQKIRTS LSQQDNRNSD GMDICFCKIN LKTNQVWFSG
1021 AKRPLYITKK DGTFKEIKGD RKSIGGKKRA NEKEFTTTEI QLESGDMIYL TSDGYADQPN
1081 QIGKKIGSLQ LQDLLKNIGS LPAQKQKQEI TDMLNVHKGD TKQRDDIAIM GIRM
//