LOCUS AFM05869.1 2029 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 surface protein 26-residue
repeat-containing protein protein.
ACCESSION CP003345-3357
PROTEIN_ID AFM05869.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_3550"
/note="PFAM: Mycoplasma protein of unknown function,
DUF285; TIGRFAM: Por secretion system C-terminal sorting
domain; bacterial surface protein 26-residue repeat"
/transl_table=11
/db_xref="InterPro:IPR005046"
BEGIN
1 MKYILLPILS KTKRIVVFNF LLFFTLFCLG QNVNAQITGD FRTSGAVTFS AATNWQRYDG
61 TNWITATNAP TASDGAILIN GPHTAQVTTS ITLDQLSVDG ILQINNSATL TLADGAGDDL
121 FVRNRLFFQA TGTIAGAGQL VFYKQAIIKT ANVGGVSASI TSTTPTFTAG VSYEFNGTAA
181 QSTGFAGLTI TNPLHFKFEN IAGVTIDANL TITGTLISLN NVPITIGAGV TSFTANAIYN
241 GGSLDNCVGA TLTPAFESTD WASPKGIYQS PDNSEPTLEA TSIHTNSNKT TAHIYWIKSG
301 SGNNRIVVLK AGSAVNTNAP IDNITYTANT AFGTGTALDG GFVVYNGKGS QVDITGLTEG
361 TTYHVTIFEY NKDCGSNQNY KTGTPLTTSF VASERPFRTT WVTTDGATPN TGKITIPTTG
421 TGYNYNITWI NLTNTGVGDG SVTGITTNNY QITGLANNDT YEIAITGAFP RFYMNNNATE
481 KAKLQTIEEW GTQVWTSMGK AFWRCSNLTY NATDIPNLSN VTDMSYMFSS CSNFNGNIGN
541 WDTQNVTDMS SMFSNAITFN QDIENWNTAA VTNMSNMFSG CTNFNRNIGN WDTQNVTDMS
601 SMFSNAITFN QDIGNWNTIS VTDMSFMFQV ATAFNQNIGN WNTQNVINMY GLFSSATNFN
661 QNIGSWNTGA VIHMLWMFAD ASAFNQDIGN WNTQAATNMS YMFREATAFN QDIGNWNTQA
721 VTNMGGMFQN ATAFNQDIGN WNTQNVINMY GLFSSATNFN QNIGSWNTGA VIHMLWMFAD
781 ASAFNQDIGN WNTQAVTNMG GMFQNATVFN QNIGDWNTQA VTNMSDMFQN ATAFNQDIGA
841 WNISNVTHSP SSPPFSSSME NMLNDSGINT ANYDATLIGW AAQTVNTGVQ LGSAGLNYCA
901 GEAARNTLET NGWTISGDSK MCPATINLLG NTNAITSGNN TPSTTNNTDF GQTPFQKTLT
961 YTIQNTGATD LTVSSIGITN GNVGEFVVSG FTPNTVIATG NDITFSIAFN PYILGIRNAT
1021 VSIVNDDADE NPYTYAIRAE GVPEVNLAGN SSAIASGSSA TETNNFTDLG RTPLQPITKT
1081 FYVQNVGVNY INVSSIVSSN PSFTISNVAP TFAIPAFSEV GFDVTFTPTT ESIQNSTITI
1141 SNDDIDEATY TFVVKGEGFC PVTTNISAST TPILPNQVGS IRLETQIGAN YQLQNVSASN
1201 ANVGNSIEGT GDVIYLQTPI LTTSADFRVV ATRGLDCGNQ ILNTVTIPVL FASFGYTQSE
1261 INNCNPSSSL ADIDVSITGS NYLWSNSTTN QDLTDVTNGI YSLTIDAETL PVIVGTPVKW
1321 KNPIQATLTN EGRIKANGIY GWGNEAAAIS SSKLEGGQTG GFTFVVEDMA TISDVMIGFA
1381 KQNNNASYRS LQNTFYITPS GELYLYWNNT YNYLLTNVAV VLGDRLTITR EGQAIKYYHN
1441 TTLLYTDTQI SNSTDDLVVD IALTKGTSPQ VWFSKCDNSF EIIYQQTAFD DCTTPTKEGS
1501 ITLLPQGGTA PYTYLWSNGA AAIQSPTNME TGITFAQVSD TYSSHSLPVI IGNPVIWDMQ
1561 GLGTGSLLST GAISATASPD NLDAGITYRY EPEQIEYMVG LSAYNTDPNW TSLQYAVYAY
1621 EDVMAIYESG NLITSYSGIK KNDRITIMRE RNQILYYKNN QEMHRTTTSL PLALHADVSI
1681 WGENTPTVYA SFCTGTAANL QLSYTQTAID DCTTGANEGA VTLQGEGGST AYSYMWTGGS
1741 TDNPRTALQR GLYEVTLTSG AATTVHPIVV GGLVNWSDLT PNTTQISGAL TATATFNWTN
1801 PAGGLSTNRL AANTDGGISY IIPSLTGVGN YQIGLSSTSA TTASWGGQEH SVWIGSYNRM
1861 MLYESGVQVG IFDVVTTGDR ISIIRRNGKI EYYLNNELIH TTNGVTQELA ADIAVIEGSS
1921 PAVYASFCNT GFRIANKVKE TKEETNFGED TFKIYPNPST GIFKVHFGTV LSENTQVTIF
1981 DGIGRKITTQ TFEKGNQDFD VNLKNQAKGM YLIHFNQNGA TYSKQIIIE
//