LOCUS       AFM05743.1              1485 aa    PRT              BCT 31-AUG-2017
DEFINITION  Bernardetia litoralis DSM 6794 large extracellular alpha-
            helical protein protein.
ACCESSION   CP003345-3231
PROTEIN_ID  AFM05743.1
SOURCE      Bernardetia litoralis DSM 6794
  ORGANISM  Bernardetia litoralis DSM 6794
            Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
            Bernardetia.
REFERENCE   1  (bases 1 to 4919337)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
            Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
            Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     The complete genome of Flexibacter litoralis DSM 6794
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4919337)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
            Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
            Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4089456
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
                      David Bruce (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Finishing done by JGI-LANL
            Annotation by JGI-ORNL and JGI-PGF
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Flexibacter litoralis DSM 6794
            collection_date     :: Missing
            lat_lon             :: 32.840 -117.258
            depth               :: Missing
            alt_elev            :: Missing
            country             :: USA
            environment         :: Marine
            num_replicons       :: 1
            ref_biomaterial     :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
            biotic_relationship :: Free living
            trophic_level       :: Missing
            rel_to_oxygen       :: Aerobe
            isol_growth_condt   :: Missing
            sequencing_meth     :: WGS
            assembly            :: Newbler v. 2.3 (pre-release)
            finishing_strategy  :: Finished
            GOLD Stamp ID       :: Gi04020
            Type Strain         :: Yes
            Funding Program     :: DOE-GEBA 2009
            Gene Calling Method :: Prodigal, GenePRIMP
            Isolation Site      :: Sea water aquarium outflow, La Jolla,
                                   California, U.S.A.
            Temperature Range   :: Mesophile
            Gram Staining       :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: 454/Illumina
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /organism="Bernardetia litoralis DSM 6794"
                     /mol_type="genomic DNA"
                     /strain="DSM 6794"
                     /isolation_source="sea water aquarium outflow"
                     /culture_collection="DSM:6794"
                     /type_material="type strain of Bernardetia litoralis"
                     /db_xref="taxon:880071"
                     /country="USA: La Jolla, CA"
                     /lat_lon="32.840 N 117.258 W"
     protein         /locus_tag="Fleli_3423"
                     /note="PFAM: A-macroglobulin receptor; A-macroglobulin
                     complement component; Alpha-macro-globulin thiol-ester
                     bond-forming region; MG2 domain; Alpha-2-macroglobulin
                     family; Alpha-2-macroglobulin family N-terminal region"
                     /transl_table=11
                     /db_xref="InterPro:IPR001599"
                     /db_xref="InterPro:IPR002890"
                     /db_xref="InterPro:IPR008930"
                     /db_xref="InterPro:IPR008969"
                     /db_xref="InterPro:IPR008970"
                     /db_xref="InterPro:IPR009048"
                     /db_xref="InterPro:IPR011625"
                     /db_xref="InterPro:IPR011626"
                     /db_xref="InterPro:IPR014766"
                     /db_xref="InterPro:IPR019565"
BEGIN
        1 MQLNFFRMWH LLAGAALTAG AVTLWGFRSK NGDEWLKKLT EINTNFQEKY SSERVYLQLD
       61 KSFYKPSETI WFQAYVQDEG TLKPSKRSDI LHVEFIDPKG NVAKKIQLIL EDGTAAGEFD
      121 LTENAAGGLY KIKAYTQWQD NFIVEENTED ENGNSFIFEK EITVQKVVLP RLKMKLDFQK
      181 DAYGAGDDVH ADLDLQSLTN EPLTEKEIDF VVSLKGQVIS KSKAKTDKKG KTTITFELPK
      241 KLDTADGLLN VLISHNGQTE SISRSIPLAN TIFDLQFFPE GGDILANTNS NIAFWCKDEF
      301 GKPADIQGII LDSKGKKVST FSSFHKGMGN FEFEAKENET YTAKITQPKN VETTYKLPET
      361 VEVGYGLKIN YPVSKKNKEK NYETSNLDFS IYSPLMEEVF LVGKLRGQII FSKKIAVKKG
      421 STAINIPTDK MPIGVANFTL FDSKKIERAE RLVFLNAEKQ LNIDVKSNKE KYQPREKVTL
      481 DIKVTDHRGI PMPANLSLSV VDDKLISFAD DKSSTILSNL LLEADLKGEI KEPRFYFDKE
      541 EDKAAQARDL LMLTHGWRAF TWEQVQKSSI NLKYNAEKAI IAGTVNDENG KPAKNIKVEI
      601 KGKDISTKTD KNGYFEFKNY KLYESITIKA TDSSKTATQH ITNYSQNYSL NLYDYNQIMK
      661 RNMMRRGGAV PMMAAVPKDR KDKVVNDEID FMEDEIADNI IFQNQMIVEN TPIIEENEKE
      721 AVKEIMEEVE IGFKDEELGG FAREENQFKK KIRAEKPNKP VIIYHRARVF PKVDYSKKEE
      781 NNDTQEVSRT DFRSTIFWSG NIKIDAKGKS QVEFYASDEI TAFRVICEGV ASDGGIGRTE
      841 SVFYTQLPFS LDTKLPLFMS MGDKISIPLQ LHNNTKKELS GTVSADYPSS WIPISESKWK
      901 NRITLQANET KVVNMDFLIE NEAGKGKFIV QFIGQNGIQD RFEQEIEVFA KGFPAAVSLS
      961 GENQDKTYSF EITSPVMGTS KATFTAFPSV LDDLLAGIES ILREPYGCFE QTSSSTYPNL
     1021 LVMDYLSIQK DLNKEQQAAL EKATALTEKG YKRLISFESK DKGYEWFGAN PAHEALTAYG
     1081 LMEFKDMAAV TGNLVDEQML TRTTNWLMER KDGKGGFKRN PQALDAFGGA DDDITNAYII
     1141 YSLSEAGFKD IKTEAETAYQ NAIKSKDPYL IGLVVNTLQN LNDKRSEKLL ETLISLQEKE
     1201 GEESGAWKGT KHSITRSTGK GLTAETTSLA LLALMKSDKK RMPILQNGVK YLVGSRSPYG
     1261 GFGNTQSTVL ALKSLTAYAK YAQRTPESGD IEIYVNSKKV TTAHYEAGQQ NAIEVENLGK
     1321 HLKAGKNTVR IHYVGVKEPL PYTFSAEWFT DLPKSSDKCS VKLETSLASS KVKIGETVRL
     1381 TTTLENTTKE GLPMTIAIVG LPGGLSAQPW QLKELIEKNK VDFYEIRNHS VVFYYRQMTP
     1441 NEKKTIYLDL KADLAGEYEG AASSAYLYYT SELKNWKKGL TVVSQ
//