LOCUS AFM05743.1 1485 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 large extracellular alpha- helical protein protein. ACCESSION CP003345-3231 PROTEIN_ID AFM05743.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3423" /note="PFAM: A-macroglobulin receptor; A-macroglobulin complement component; Alpha-macro-globulin thiol-ester bond-forming region; MG2 domain; Alpha-2-macroglobulin family; Alpha-2-macroglobulin family N-terminal region" /transl_table=11 /db_xref="InterPro:IPR001599" /db_xref="InterPro:IPR002890" /db_xref="InterPro:IPR008930" /db_xref="InterPro:IPR008969" /db_xref="InterPro:IPR008970" /db_xref="InterPro:IPR009048" /db_xref="InterPro:IPR011625" /db_xref="InterPro:IPR011626" /db_xref="InterPro:IPR014766" /db_xref="InterPro:IPR019565" BEGIN 1 MQLNFFRMWH LLAGAALTAG AVTLWGFRSK NGDEWLKKLT EINTNFQEKY SSERVYLQLD 61 KSFYKPSETI WFQAYVQDEG TLKPSKRSDI LHVEFIDPKG NVAKKIQLIL EDGTAAGEFD 121 LTENAAGGLY KIKAYTQWQD NFIVEENTED ENGNSFIFEK EITVQKVVLP RLKMKLDFQK 181 DAYGAGDDVH ADLDLQSLTN EPLTEKEIDF VVSLKGQVIS KSKAKTDKKG KTTITFELPK 241 KLDTADGLLN VLISHNGQTE SISRSIPLAN TIFDLQFFPE GGDILANTNS NIAFWCKDEF 301 GKPADIQGII LDSKGKKVST FSSFHKGMGN FEFEAKENET YTAKITQPKN VETTYKLPET 361 VEVGYGLKIN YPVSKKNKEK NYETSNLDFS IYSPLMEEVF LVGKLRGQII FSKKIAVKKG 421 STAINIPTDK MPIGVANFTL FDSKKIERAE RLVFLNAEKQ LNIDVKSNKE KYQPREKVTL 481 DIKVTDHRGI PMPANLSLSV VDDKLISFAD DKSSTILSNL LLEADLKGEI KEPRFYFDKE 541 EDKAAQARDL LMLTHGWRAF TWEQVQKSSI NLKYNAEKAI IAGTVNDENG KPAKNIKVEI 601 KGKDISTKTD KNGYFEFKNY KLYESITIKA TDSSKTATQH ITNYSQNYSL NLYDYNQIMK 661 RNMMRRGGAV PMMAAVPKDR KDKVVNDEID FMEDEIADNI IFQNQMIVEN TPIIEENEKE 721 AVKEIMEEVE IGFKDEELGG FAREENQFKK KIRAEKPNKP VIIYHRARVF PKVDYSKKEE 781 NNDTQEVSRT DFRSTIFWSG NIKIDAKGKS QVEFYASDEI TAFRVICEGV ASDGGIGRTE 841 SVFYTQLPFS LDTKLPLFMS MGDKISIPLQ LHNNTKKELS GTVSADYPSS WIPISESKWK 901 NRITLQANET KVVNMDFLIE NEAGKGKFIV QFIGQNGIQD RFEQEIEVFA KGFPAAVSLS 961 GENQDKTYSF EITSPVMGTS KATFTAFPSV LDDLLAGIES ILREPYGCFE QTSSSTYPNL 1021 LVMDYLSIQK DLNKEQQAAL EKATALTEKG YKRLISFESK DKGYEWFGAN PAHEALTAYG 1081 LMEFKDMAAV TGNLVDEQML TRTTNWLMER KDGKGGFKRN PQALDAFGGA DDDITNAYII 1141 YSLSEAGFKD IKTEAETAYQ NAIKSKDPYL IGLVVNTLQN LNDKRSEKLL ETLISLQEKE 1201 GEESGAWKGT KHSITRSTGK GLTAETTSLA LLALMKSDKK RMPILQNGVK YLVGSRSPYG 1261 GFGNTQSTVL ALKSLTAYAK YAQRTPESGD IEIYVNSKKV TTAHYEAGQQ NAIEVENLGK 1321 HLKAGKNTVR IHYVGVKEPL PYTFSAEWFT DLPKSSDKCS VKLETSLASS KVKIGETVRL 1381 TTTLENTTKE GLPMTIAIVG LPGGLSAQPW QLKELIEKNK VDFYEIRNHS VVFYYRQMTP 1441 NEKKTIYLDL KADLAGEYEG AASSAYLYYT SELKNWKKGL TVVSQ //