LOCUS AFM05521.1 1071 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 Leucine Rich Repeat (LRR)
-containing protein protein.
ACCESSION CP003345-3009
PROTEIN_ID AFM05521.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_3189"
/note="PFAM: Miro-like protein; TIGRFAM: small GTP-binding
protein domain"
/transl_table=11
/db_xref="InterPro:IPR001611"
/db_xref="InterPro:IPR001806"
/db_xref="InterPro:IPR013684"
/db_xref="InterPro:IPR020859"
BEGIN
1 MDNKEVNKPE QVLWLEEQLG FKLDERKTEN GLIDNGYMID DNKEIIGLNL FYRDITNISF
61 LLNLRELEIL RISYNKIKDI SILSELAKSK VLNISNNYVS DISSLSNLKT LEVLFANHNE
121 IFDVSPLLDL HRLKFLDLSH NFLSNLFALS NLTQLEDLRL NYNRIYDISF LSSLSNLTNL
181 KNLKTLDLSL NEISDISFLS ELKNLRNLYL SYNQVLNISA LVKLDKLIKI HIDYNQISSK
241 EGIKEIVENE NLRELYLYGN FIPYLPKELI GTHSRSNCLQ DLRNYYQNQD FVPNKEIKVV
301 ILGNGMVGKS TLLNRFLNPD DDWSKTKIKI EDRTEGIVIK ENIPFYLEDD KEIRLNIWDF
361 GGQEVYHGTH RLFLNKDAVY IIVWTLETDE QKEEIRQDLN YWLDYAQDLA IDSPIILVHS
421 QCEKVKDEDQ EKIREQKMLG WNEKYKNNIV EEYLPFSAKE KIGVEELNKA IRKAIKDKLS
481 DRVETKIPKK WSDLRDDLRK LREKEEDKKN EISKEDYLKE CANYEIEESE AETILTFLHR
541 TGFLYYYTEL SKNIILNQTW AIEAIYEALK PSGLVKDKNG KISSERLKRL WIEKGYSEEE
601 AKTFIDFMVS SEICFCKEQQ NYRDLENPTF IVPHYLEEPN PLLIEWDKPD SFYIIYKPQF
661 FHKGIAERFL SRLGRLSGQN ALWKDGILLK SDIFSSKALI TFDREKKEVN ISTENYELLE
721 AVLKELNKIL DEGSQTKPSE KVTFFYSLDG NEFVEKKMID YSKKTGGNLV ENTKGVMTEL
781 NPFLEKYNFG STEKTVSKES DFEKEDKQNE TLLTREANNK KNITVMNENQ TNSTIQKALK
841 HIENANYGGY FEEMDKIVPT FQRAIYSELK GKFIAGNIPY NFHQSLSMFA RELNNQSSSI
901 LNQSTSTNSN DMSSNQNSNS PINITITNSP QNTNTSINTN KNDNNQQIDF KAFENSLIDL
961 QRNLGYAKQE IEEKINKEGE NAQLVEAKEI IAKTIDAAEQ IEEDAEKAID GDKKAEKNIK
1021 KDKSGFFRVV KACATYFPKI AEKAINPKTW EDAEKSLVAA GKFGEQLGNM M
//