LOCUS AFM05510.1 816 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 tetratricopeptide repeat protein protein. ACCESSION CP003345-2998 PROTEIN_ID AFM05510.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3178" /note="PFAM: Tetratricopeptide repeat; Stage II sporulation protein E (SpoIIE)" /transl_table=11 /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR010822" /db_xref="InterPro:IPR011990" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR019734" BEGIN 1 MRFCFIVFLV FGISFSVFAQ SGQTVEELLK SARLEKSEQK LASALRYYLQ AVNKLEKQNN 61 KKALFQVYTE IGIIYQNGGL HDKAIEYFIK SQEVIDANSS SQAAVSMRLG ESYLAQKDYP 121 QTIAAYQNAK QIYQPQQKPY ATIQALRQLI TAYQANKDYQ TALEANKEIL EVDRSIGDSA 181 AVAATLNNIG YVHKFLGNYS KAITSFDQAR KIERKLGLEE DPITLTNVAI VYQNLTQYDN 241 ALRFLKEATK IVENKKEPKE LARLYNITAA IYYQLGDYHN AREYNELALE YAKKYKQREI 301 TKDIHLTASQ INQANNNYED ALKSYEKHLN IRDSLLLEER LKQQELLQQQ FLIERTEKEL 361 QLYMVDEELK TAQLKEQELT LEKQNQELAL LQQKQELQAE RLEKEGLEKQ RTKQELLIAQ 421 QQLNAEKARR EVEDLQQKEL NRQREVESLE QQADLNKQTL ARERAEAEKK QAQAQAQANA 481 KEAEREAQQK IVMIAAGLTL LILLVIGFAF LNSRKKNKEL AQQKDQIESK NVELEQQTEE 541 IQMQRDAVAH KSEQVNELYK KVTDSVRYAQ RIQDAILVPP AQVFTNFGNK TEGFVLFKPR 601 DIVSGDFYWT TEKNNKVILT AADCTGHGVP GAFMSLIGND LLNEIVNFRG ITAPHEILNE 661 LHAGVQNTLK QKETENRDGM DMALCVYDKE KNILEFAGAK NPLLYIQNGE IKVIKGDKKP 721 IGGKDFYEED SFTTHSIDLN EENAPKMFYI FSDGYQDQFG GIEGRKFMIK KLRGLLQEIH 781 QKPMEQQHQI LDETIIDWMK NEEQIDDILL MGFRIG //