LOCUS AFM05414.1 1102 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 ABC-type multidrug transport
system, ATPase component protein.
ACCESSION CP003345-2902
PROTEIN_ID AFM05414.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_3074"
/note="PFAM: ABC transporter; ABC-2 type transporter"
/transl_table=11
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR013525"
/db_xref="InterPro:IPR017871"
BEGIN
1 MSEEILKALT QLFAVVSKQD GGVSEAERNF VIRYFEQELD RKRLSEYVAL YDQYAESGVE
61 GEDKKGAEAT ANPEDIIIIT EGKTPEEIEK QEKDKARAIR KAARKAKKLA EGGSEDDSKI
121 KLKDSMRTLK VCRNINKTLA QKQKVIVTFK ILEMLAVDRN FSSHRLEIIK TASEIFRIPQ
181 EEYKLMQDFV MATDSHQMFD SPNLLVFDEE APPVESRKKF IDSGLLDGEI VFIRLKSVEL
241 YFTKYNGKDE IFLNGQLVKK DTIVLFSNGS VFKTPKGAPL YYSDLVTRYN DTAQQNPISF
301 NAINLDFRFP DGTIGLRNVN IAEGPGKLLS IMGASGAGKT TLLNVLAGLE SPYKGAVEIN
361 GFNLHTESDK VEGVIGYVSQ DDLLIEELSV YQNLYYNAKL CFGKLSEEEL DTRVMEVLAS
421 LGLDRIKDIT VGSVLNKMIS GGQRKRLNIA LELIREPAVM FVDEPTSGLS SRDSENVIDL
481 LKELSLKGKL IFVVIHQPSS DIYKMFDKMI LLDTGGYPIY YGNPVEAIAY FKRATNQVGS
541 DNGQCQTCGT VTPELLFNII EARVVNEYGE YTGVRKIAPA EWNDLYKQTH SVKPVETVNE
601 PPPNSLSIPS KIKQAAIFTT RDFLSKIRDK QYMMINLLEA PLLALLLAVI VRFKNAKDAE
661 EYVFRYNDNV PAYMLIAIIV ALFMGLTVSA EEIIRDRKIQ RRESFLNLSR MSYLTSKVGI
721 LFTLSAIQTL SFALIGNTIL EIQDMYWQYW LVLFSISCFA NALGLNISAS FNSAVTVYIL
781 IPLLLIPQMI LSGAIFRFDQ LNNSIVEKGR IPLVADLMAS RWAYEALTVE QFKDNPFERQ
841 IFDVEFEISQ YSHKANFWIP KMQEILDRAA NYAESAQNEN ADSVMILLQN DIALLKHEWQ
901 SEKVNEILER LKIQAEDLEL SSEEQKILNI DLEKTLQIIE FDRAMADKLK AVLEMIRSKV
961 LTPKFVMAGE RKDSIINAME QNPENKLSVV DLQNKYTNEY LESQVKNEMI KDKYVEGNGF
1021 LVQQTDPIFA VRNPNNISNA FDYRTHFFAP EKHFFGKYFD TMWFNVFVMW AMTILLLITL
1081 YFEWLKKLID ILGNISFAKK KK
//