LOCUS AFM05370.1 2270 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-2858
PROTEIN_ID AFM05370.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_3029"
/note="TIGRFAM: Por secretion system C-terminal sorting
domain"
/transl_table=11
BEGIN
1 MTASFDGDND FQDAFTVGST VNNTTGITFT GDGRNQFQGD VTLGASSSFF SLQNTSASPN
61 TFTNISITNI PTPPTAIPAA IWEFSSNSTN TVSGNFVVSA DCIAPVIIRG NGGIANVAFA
121 TDQTWSNVTV SNINETGAGT VTVLSTTDGG GNSNIVFHTT NRTLYWVGNT GDWGNTNNWS
181 ATSGGAGGEC LPTLNDDVFF DANSFNAAGQ TVTVDIDSEC KDIIWTGATG NPTITGVNTL
241 NMQIGGDVTL IAAMNWDFNG DVNFRYTDLL ETENTIISEG QAFNADVNFY DNSLGTGTWQ
301 LADDFETTQT FNLVDGTFTT SPANHQLTAQ IIDVFTMADA IGNPTRELNL NGSVANATLN
361 NGTAVDFRGN TTNFTLSSTA TSEIHITGIG DINLEMGEAA KTIPNLFIDN AGAGNIVNVN
421 TSGVEDELSR ITFRDITAIQ DNLTFNINGQ APKTYENILF PNSALVDFRG VDNAAPLLNL
481 YTGTVNFGTN TRIDWYGDNQ FQRAVTIAST TNDGNAVRLH EDNEFLVTAP LTFSVAGIAR
541 FTAGGGNRTN IFRAPVNLLG GRNVLVFLGN QTTIARFTNT LFVESTAGQQ ALIDFRSRPE
601 FHAQVEFGEA AGGNNTTQVR FRRGLDFSPA PAGTKFITGD DTRMEFLNAD VSVIRDMEVG
661 INNVLTFNND LTIDNLNLTS FDVVNFPNSD GTAPNNGTTT VTGFIDARQD CAGWINMRSN
721 LTGVQADIDF QNAHAGLDGF LYTFIQDINN IGGNTVEADP AVVSDIGNNT NITFINNQPS
781 RTFYWVESPA GSNSGDWNGL GADNHWAFSS GGVASGCIPT ANDHVIFDDN SFDAGFPIET
841 VEIDNFYSYC KDMTWSASDA NRGRLIGDNA HTVQVFGNLT FADFNSDRDW NDFPGTFEFK
901 GTDIGEAKTL LNNGSRFYGY VVFNAPYDDW TLLDSMRVEG GGRANITITY GDLFSNDQNI
961 RLEHNWTISN NTATLPQARF IAGVGTVTFD GNTDADITIA DVESGVDCTE CTSVVNTCST
1021 SPFYNLTNEK SWNRRTELNT TISILNNFHI VGGYFEDDGN QIRGNAIGNV YMSPNTLLRL
1081 GDDDDATVFP TCYLPANINL SNGATDGLVD DNSFPVNAST QASIVEYRCP DDQMVAGEFS
1141 YGTLRLVSSN TSEGNNIKRF TGEATIEGAF FIGDEQTVYD MGYQIIGNSH TQPNNILSTG
1201 DNVTLVLGTN QTATERTYTA THTEPNITIP PVVTADIATT FPKFTTGNGT FGNGIFSDTK
1261 VNLNVNSTVI FNANADQEVA GGITYGNIIL RATGADIANP GLKTVTQHNT ASAGEMTIKG
1321 DALVESFNHF IDDGFQITGN ATGTFTGEAD SKMIIGNQTS GTNFPNLFIR ANISLDANDH
1381 ETIYNSDVAQ FMSNEPIYGN LTLTAPNSID AELVEKRFQP DPAGTNAGLT ADIHGDLLIN
1441 PRNHLIDEGN QITGLAPKSV TMNSDAPLGE SRLTLGTNTT DIATQFPLTF GTVVLNDLTT
1501 IIYNAGGAGL NQLVRGTGLN GIETGTDSYY NLIIQSNNEF TGIKTLQAPT RIRNNFTIRR
1561 GNRFEDNRNQ VTGSTSTAAG ILTMENGATL YVGVNNGSIP TVFPTNYERS RITLDDNSTV
1621 RYQSRRGGTG QLVSSEPIYG HLYLTAGFGA AGGNFTKQID ENPVIATNPT LTVDGNLTVH
1681 YRVSWEDLGV QIIGNATNNL FVEDGSELVL GTGTTATLFP SGFTRGNTDL SVTATTKSRV
1741 IYNSSIAGND IAGGAGLLPT EIDNPIYGDV ILRSPTGAAV TKNLLGNVVI KGDLLIEDDN
1801 TLETTTSDFN INLAENWTCE SDATFNSQQG RVILDGTTEQ RLTTNAQKFF ELEASTTGGS
1861 FRMIDDITIK TGGKTIFNTG LFIPNDVGDL STIKMIFEEN ATVDGSGVYT LGSWINTTAP
1921 ALSANGPSNV SHVVGKVEKQ GTDAFMFPIG NGTNYAPAGL SARGSSSTSF EARYIGPRLP
1981 TTDGYDVDLK ESTIYGVSHL EYWLIDQLTA STESAFVYLS WDNPRSVAYR PEHLKTLRWN
2041 GALWTDKFLG GYSNASAKGI IASQAAVSTF SPWTLGTHTQ YNPLPLDLLS FDANIEGESV
2101 KVDWETTNEK DNSHFMIERS QDGNSFGSLG RVNAKGTDLE GTFNYQFWDA EPFTGLSYYR
2161 LKQVDLNGDF EYSPVRSILF EKTISGIKGE ISLYPNPNGG ARFYLNLEGK LTTDAQVEVI
2221 DMMGRTIHKQ AVQKGAADII VTPMRVLPAG TYILRFVTPQ ESITKKFVVE
//