LOCUS AFM05290.1 1051 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 cation/multidrug efflux pump protein. ACCESSION CP003345-2778 PROTEIN_ID AFM05290.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2943" /note="PFAM: AcrB/AcrD/AcrF family" /transl_table=11 /db_xref="InterPro:IPR001036" BEGIN 1 MKTNQNPFLH FLFSRPVGVL MAMLGILVLS LVAFSKLPVS LLPSLDVPEL VIQLDYRGHS 61 PEEIEQTILR PIRENVLTLN GLKRTESEAR SQIGQVRLYF EFGTDMTLAY IDANEKLDRL 121 LGSLPKELPR PRIIKINTAD IPILHLQIVP KKQENQNNLL ATSELVEKVI KKQLEAVEGI 181 SLVDANGLKE KQISISTNLR KLQSLGLSET DLITTIKSAN QTLSSISVKE GQYRYFVKIA 241 TILEDKKDLE NLPIRLNINS DATKNKQKGT VVLLKDIAKI ELEEPTPQGF HLFNQKEAFV 301 LTLHKQSQAQ IQELTPKIDQ TLEDLKQNFP ELEFITTQNQ TTLLNLAIDN LKNSLLIGGI 361 CVFLVLFIFM GNWRVPLIIG ISLPVSLIYG FGLFYVFDVS INVISLSGMA LGLGMLIDNS 421 IIVLENIEQF RNRNFEMKEA AILGVQEVIA PLVSSVLTTL SVFVPLIFLN GLSGALFYDQ 481 AISAGAVLFT SLVVAFLMLP HLYLILNRKK SSMTTLDLLR GEKNKETKIY KFLLSLYQKI 541 FLFLENHKKI FLSFSLFLII LPVFLFYQLD IEGAPKINKT DCSLLINWNE PIDATENKIR 601 CKRLLETFSN QITFSESDIG QKKYFLQNDN STQIQANLYL FFDNQNQKET TQNQIAEWIF 661 KTYPATIFDF LPAPDAFSQL FISEEPSIEL RIRTTTQNQI LEYAIFDSIY NQINFETNNT 721 AQKGKGTSRE TLVLLEINTE KAALYGFSQQ DILQKLTYEL GEFAVTDLTS FGQIVPIRFK 781 KGNKTVEEII NESSLKVNNV ESNTDFAENS SQTINQIPLR LFIDFKKSNS YNTLTADELG 841 IYQSVFWEDI NNIQPTKQQQ IKNDILTYLP NIQTNFKGTY FSNQENLTQF IFILSISIGL 901 LYFILVAQFE SFWQPLLVLF TLPLGISGSL LLLIFSQTSL NTMAIIGIIV MLGIMVNDAI 961 LKIDTINKLK KEMSLYDAVH EAGKLRLKPI LMTSITTILA VIPILFSEGL GADLQKPLVW 1021 AVVGGLSVGT ITALFFIPMA YFEIAKYQKN E //