LOCUS AFM05272.1 2936 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-2760
PROTEIN_ID AFM05272.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_2923"
/note="TIGRFAM: gliding motility-associated C-terminal
domain"
/transl_table=11
/db_xref="InterPro:IPR000601"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR013783"
BEGIN
1 MRVSLSIYFY LFVFVLFFGL NSNSLFAQYS TDFTANTTEI CEDESVTFTP TIVPTPNQYQ
61 YLTWNLDGQN VNAPYSPFNY VFEDAGIYSP SLSYQNDNVT RTDYVTVNPN PVSSLQNNPW
121 EWVHSVSAPL GSTTGQGYHP NPVNADIDSK GNLYIGGQWD GQITTDNNNP PYENYPPSVT
181 KFDKLGNIKW EIPNAAQVVV DDFDNVFAVG QFTSTIDLPS SSCGSVTVSS SLSHSWFLAK
241 YSSNGELLWA NTIEGNNAMA DILLATGGGK LYAVGKFWQA NTVSATGQNN TNQSVTGATQ
301 KTFILEYSTN TGELHQNIHT ISNLYIREVY TYGSEDYLRR SVSADRNGNL YITMPTESQV
361 YFDNNLILDE SANNIITNQA MHIYIKYKDD AIQTIKSVFP TGRSDAWMLS KHTTDDEGNM
421 YWSIRTVEGQ IWSVFGQTYP YADHYLIKIN PLGDIVWSRS IKIGRAVGGA NFFSQTHAIT
481 VDNNNQVFLL DKNKLHFYDG ENGNKLREPV EVGYSNVPDL MTARNGMLYL GNVIQTPTSS
541 FMIGSHTIDP IPSSVPLIYS QAFIAKYNYN QTLPQNRSID LQATLQTGAP SVSYQWYKDG
601 NVINGATSAT YTANQIGFYQ VETTTAQGCS RRSVGQYLSE PATFLVSDNE VCVGEPIILE
661 ATDLLGTNTE WNFGLDGSPN LINASTNQSG EIKQGVTYTE AGTKTITYQD GTTSLTENVT
721 VRPLPVSSEL SISNTSSLSI IDTTTTLTYS GISALPVIAT ATGDGNNMYF GKSNGFSGNS
781 SIPKTSLIKR NIYDEIVWEY ELDGIAEINK IQYDNNGGVY VFAQTIRPIY MSHTTATFRG
841 ANQTITRLIE RTTFLRPIYF VIKYDTDGNL LHVIQTEFCQ FEATTNGFYL TYGLTEALPP
901 TSLVYSSSFG EFRVDVTTNP NRVMMARFDS NMNFQWVKEA DNAKILPTAH SMGGADSHVI
961 SNSDEDLFII YQALNDTIEF DNQTYIKNCI PEVTNRGGIG IIKVSSTGQL LWADILSTSG
1021 TPTINNEARN NERLEIDNQG NILVLTKIRE GSDLYSSENG RVTDFLNVDT HTSRTDFKNR
1081 VLIKYNTNGG IEWNKNIGYD YYEITTLETN KTNNIFIVFN TANVFGDIPQ TNLSNLPSNQ
1141 VTIVELNAKT GNVVQYISPE VENISWNCFY LSFNKLNSLY FSYIDYQFTG GGGTGGGSAL
1201 NYKNILKKYG SNICIDEGTT ISIQNTQPNT TYTWFKNGQN TGNNGTSITI TEEGTYSVEA
1261 ENEFGCRQSS AATHFSLFPE VQILPQQNPV IGYGSAVIGA LATPLGRDYE YQWQFNGVDI
1321 LNATSPILIA NESGNYQVKV VSEDACEIIS DVKEVQIRIR NGRATIINDS LTLVSDRASS
1381 ATSTFSEGLD VDVNGEFIFE GGVFSNNLTF GSNSLTSRGL QDGYLVKRDT TGNILWNRSW
1441 GSNGDDQTNS IATTTEGEAI IGGYFNQTVT IGDTTIISKG ETDGILAKYA ANGDFVWAVS
1501 TAGDQNDQIT SVATDLGGHA IAAGFTTNAA TVSTLRTDTT FTQSGENAFV IRYQPNGKLL
1561 WANQLISPVS AKSTTVTTDI FGDVFVAGAF KTSLSATDEN GTNLNLNGTT AELGFVAKYD
1621 EYGRLLWLKS LPKVAKGIDT DDFGNVFITG QEFLYSFLPN GQSRFEETFP ANAIISNIAV
1681 GRSGKIAISG HFTRTLNGNA ANRNEEGFVS YFLPNGTLLD TQIQGGTQND RINGVSFDDL
1741 GNVYTTGFYE NSMTLGENTL SNNGRASVFN RFQPILVGCD LDILAQNHAN TGFEWTENGQ
1801 NIENGTTLNF SNGNAYLLVG ATENGFMTQD GVRIQTQTAV TDLGEDQNSC QIITLDAGDN
1861 EGNGFTRFEW YKDNILITGE ENQTLEVNES GTYKVIAFTS QDCQATDEVN LTVAPLEVLM
1921 SVQNDTLVCE DSPIELIGIG ADTYIYFKNN NPIGTGNSLT VLDAQNGDSF YVEGTRTSDN
1981 CINSSIPIMV NTKTIPQIDL GLNDQYFCSN DTLQLTANLT SSTNSNQYIF DWYRIEPSQT
2041 TAERIGNGRE ELNIIQSGKY FVIVSNSDNN VSCNRISDTV TVNTYDLPVV SVQDVHICDT
2101 AQNAKLSASD ISHGNMISYE WKNLITGQNV GTDSILFVTD EDFYQVKVTN TSTGCSVLDT
2161 AKAFFHTTPN FEIRGYENPL CDRNDTLFIE ATNLQDYSVE WFGNGIVSTV STTQNQSIVI
2221 NRSGIYTVTV TDTQTGCSTT KTQEVIINQI PILSSLPQSS IQNPIQVCQG DSVVLDAFDA
2281 THEPNAIYEW VRLSNRNAAT QTLSTSPKVA LTYEETLGLM PFAYQVKVSY PTTNCFITDT
2341 VFVQFKRKSN VIATSNKAQI CLGEEVNFEA TGATSYLWND GNTNAIRTVQ PDSVGAWTYI
2401 IEGKYDNDCN SSFDTIIVKV NPIPVAQIEE ESIILCENER LQIDGFLPQH SVTSRYVWTH
2461 VENNQVLSNN TELNTSFNQI LPISYEPFTL RLTVFDSLTN CESSDEVRVK FNRSSNVKIT
2521 ENYPSKICIN EEVTFTATGA TSYSWKKLND TSNVVLDSTN QVTIQLVSTG FHTFIVEGSY
2581 QNGCNSTFDT VSVFVNPVPQ IKAHIADSIN ICAGNSVLLL PSGGVSYTWQ HNPTAKDSIS
2641 VSPTKSTTYY VIGTDENGCQ NIDSVFIYVT PTFELPNLIQ LCQGEIITIG DTLSSDLNAV
2701 YEWLPTKEKT PFITVSKSGI YTVKVNVENC EFERSIEIQI KEKPVIELVA DTVLCFEAGA
2761 EERFERNLSH NLGSVITNYD SSATYLYVWT DENEQIIGTQ PNLEINEGGN YRLRVIARYG
2821 NNCEVTDSIL VTELCQPRIF IPEAFTPNND NLNDYFEIFG KHAIDFEMQI FDRWGQVMYQ
2881 LNAANIEDLS QEEFWDGTYK GKQVPTGAYI WIIRYSSPID KTAKQIQKTG SLMIIR
//