LOCUS AFM05266.1 1376 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 putative periplasmic ligand-
binding sensor domain protein protein.
ACCESSION CP003345-2754
PROTEIN_ID AFM05266.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_2917"
/note="PFAM: Y_Y_Y domain; Two component regulator
propeller; Stage II sporulation protein E (SpoIIE)"
/transl_table=11
/db_xref="InterPro:IPR010822"
/db_xref="InterPro:IPR011042"
/db_xref="InterPro:IPR011110"
/db_xref="InterPro:IPR011123"
BEGIN
1 MLHLSQFSSK ISLSFIRIVF FLIFLISQNL VSFVYAQETV LDWRFDKLTS QDGLSQNTIT
61 CMLQDNLGFI WIGTQNGLNR YDASNFKTYK VEQIKNSILD NHITFLLQTE DNFIWIGTQN
121 GGLSKLNTIT EQFENFSNNP QNPLSLSEGA ITSILKDSKN RLWIGTSIGG LNLFNTQTKT
181 FDHYRNDERN QNSLTQNHIT DIIEDNQKRL WIATAEGGLD RFEENENKFI HFRPDIYGNS
241 SSAPSSEQII GLEILKKQDT KNNQLSNKLW IATRDGGINI LDLDTEIFTV LEANEQDLEG
301 NKNYKKEDKK RKPTTKNLFS GKIITTFESF ENEMFIGTQE HGVLIINSST NQIKHLESNP
361 SLRYSLSNNH ITSIFKDNQN SIWIGSLAEG INKFNPLKNK FSHFREEADK PKSLPDSRIT
421 SVLKANNDNL WIGTASGGIA VLTPKNEKER IFKVFQNRAK DQTTIASDKI SVIYQDKQNQ
481 VWVGTSEGLE NFNEQKQIFE KIPVYNEKLT NPDKISVKEI FQDSKNNYWI GLYQQGLLKL
541 LPAGGTELFR NEIYNDFSLS NNYVRVIFED KIGNLWIGTE KGLNLYDNNP NSEKFVRYMH
601 QIENENSISN DEILSITEDD DGNIWIGTAN GLNKFDVKKG AFTIFTEEDG LPNNIIHAVV
661 CDLQNRIWVS TSQGIAEIDP YSKTIRSYDM SDGLQSNEFI SGSVFQEKIT DKRTGEEKQG
721 FIYFGGINGF NRFNPDSLSY NTDVPKLVFT QFSLFNKVIS PSDKNSYLEK TIPYTKEIIL
781 PYDANVFSID FSVLDFIAPH KTKYSYYLEG FDKEWHSTNR NFVTYTNLAS GSYILKVKGS
841 NSDGIWNDTG IEMNIIITPP FWKTWWFITL IVFLLLAITI GGYNIRTYQI QEQKHKLEHQ
901 VEERTNELAE KTWELESQTK QLENQNSLLE KQSKEIQVAY DNVNILSEVG QKITSTLDMK
961 QMIETVYQNV SALMPVDRFG IGVFNEESQR LEFPFFVEGE TYFPFHTKSL NDKKRLSVIC
1021 YETQKEISIQ DFEAENKNYA TDGIEMEFGK VPKSAAYFPL SVEQHAIGIL TVQSFQKNAY
1081 STQHLTILRS LAAYTSIALD NAKAYKTIET NNRNITDSIR YALTIQQAML PEKELLDSLF
1141 ASHFVIFKPL SMVSGDFYWV SKIETKIDGI IKTQIYTAII DCTGHGVPGG FMSVIGKTLL
1201 DEIVQTQQVR EPSKILELLD KNTRAVLKQD QTSNDDGMDV ALFCMEEKED KKFKITFAGA
1261 KRPLYFIEKT GQLPKLEVIK GSRRSIGGRK RNNPTPFIDN EIILESGSLI YLTTDGFADQ
1321 PNPERKKVGS IKLVNFIEKN SIKLMKKQKI DLLTLLREHQ QETAQVDDIS LIGIRI
//