LOCUS AFM05244.1 807 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 transcriptional accessory protein protein. ACCESSION CP003345-2732 PROTEIN_ID AFM05244.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2894" /note="PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region" /transl_table=11 /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR005227" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR016027" /db_xref="InterPro:IPR018974" /db_xref="InterPro:IPR023097" BEGIN 1 MDQALLDAQH IVQIAAELGV RVKQVEATAQ LLDEGATVPF ISRYRKEVTG TLDEVQVASV 61 RDRLLQLREL DKRREAILKS INEQEKLTPE LEEKINAVQT LSALEDLYLP YKQKRKTRAS 121 MAKEKGLEPL ALQILEQGRL DLEKTAKQFI DEEKGVKTLE EALAGARDII AEHINEHAET 181 RAKMRTVFQK EGTISAKVIA GKEKEGEKYR DYFEWEEPLI EAPSHRVLAL RRAEKEGILL 241 LDLQPNQERA ITLLEENFVH SNTKSSDQVQ IAVKDAYKRL LKPSMETEIR MLSKQRADQE 301 AITIFAENLR QLLLSAPLGQ KNTLALDPGF RTGCKLVVLD KQGKLVYNDT IYPNEPQKDT 361 IKAGNILLAL AEKYNIEAIA IGNGTASRET ERFVKAIPNL PKSIQIVVVS ESGASIYSAS 421 DVAREEFADY DLTVRGAVSI GRRLMDPLAE LVKLDPKSIG VGQYQHDVDQ KQLKNSLDDT 481 VMSCVNAVGV EVNTASKELL SYVSGLGASL AKNIVTFRNE NGAFTSRKQL KKVPRLGDKA 541 FEQAAGFLRI RDAKNLLDAS AVHPESYPIV EKMAKDLSTT IEELIKNEEL RKQINLKNYV 601 TDTVGLPTLE DIVSELAKPG RDPREQFEAF SFVEGVEKME DLQIGMKLSG IVTNITDFGA 661 FIDVGVHQDG LAHISQLSDK FINHPTEAVK VHQKVETTVM DVDLSRKRIA LSLKSEPFGA 721 NPIKGEAKKS NVSNSKSTIG ADRKNDSKFS RGSSVSDKNT ERPVRKSSYK KADSFINRQQ 781 KTKEEEPKET GGTMADKLAA LRNKFGK //