LOCUS AFM05022.1 1182 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 chromosome segregation
protein SMC protein.
ACCESSION CP003345-2510
PROTEIN_ID AFM05022.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_2665"
/note="PFAM: RecF/RecN/SMC N terminal domain; SMC proteins
Flexible Hinge Domain; TIGRFAM: chromosome segregation
protein SMC, common bacterial type"
/transl_table=11
/db_xref="InterPro:IPR003395"
/db_xref="InterPro:IPR010935"
BEGIN
1 MQLLRLEIKG FKSFGDKVTI RFDEGITGVV GPNGCGKSNI IDAMRWVLGE HRTRHLRSDK
61 MSNIIFNGTA KRKAADAAEV SLYFDNNRKL LPPEYKEVCI TRRYTRSGSS EYFLNGTACR
121 RKDITNLLMN TGATSNSYAI IELKMVDDIL TDREDARKVM FEEAAGVAQF KQRKKETLAK
181 LEATLSDLER VEDLVHEIEK NMSGLERQAK QAEKYFSTKE AYEKFSIALA KRQVRNNSDD
241 FVELNNQVNE ILAQKETLTN EQENLEKSIE DQKNTATEQE KIIAEKKRYL SSQIEKINQF
301 QNEKVRNEDR TQFLNRNHKQ IEEQLLQDES GTKQAGNSLE SLQQNLESNQ KQFLETQAIL
361 ENFKKSYSEE KIRTENLRSA MQAAQEKFKT LQNDILIHQK EIELKENQQS GSKQENDQIA
421 LDFSGQADEL QITLKKLQEI ENELKNRNNE ISELEKIETE RTQKINSLTI QIESLKEQIG
481 IKQRKESSLK AEQNLTKSLV ENMEGFSNAL KYLNNSLNTD NSWSEEAVLL ADIFTAQGEY
541 KDALFSILEP YLNFYVVQTE DEARKAISLL TENEKGKANF FVLDKLESVI PNLPPIDNAV
601 AALAVIQFDE NYKKLAYSLF HNVYFSENDN SNDVEGFTIA LKNGQFVARN GGNWTGGKGK
661 STTNQNSQLG RKQRLEELNK EILNLENGIF ELESQRNEFL NQIENLKEQS QFEELRNLKN
721 ETNQVSQQKI SLQAKAEQME ESVKRSEERK QAAQDRLSIL AEQIEKLKPK INQKKQEIIE
781 AERVYYDLNE NYSVQNERFQ GISEELQEKN MTFIQFENKL ENLKQEIKFK QTSLLTGKER
841 ITQSQQQLQE IAKEVNQLKE KIALQTEEIT SLSEIKGDLQ HDLSEIESQF YKLREEITRV
901 EKVIKELQRQ RENCDTRTMS FQNKLNETKL KLTATRERLS AEFEIELTDE LLEAKTEEDE
961 LPNETLIDEI EAAKRRLQRI GTINATAKEA YDEIKGRHDF ITEQRSDLFD AQKLLEDTIA
1021 ELDEAAKTAF LDAFYQIREN FIRVFRSLFS EEDNCDLVLS NPEDPLSSKI EVIAQPKGKR
1081 PLTIKQLSGG EKTLTAVALL FALYLLRPAP FCIFDEVDAP LDDANIDKFN RIIKKFAQEV
1141 QFIIVTHNKR TMVSTDVVYG VTMPEIGVSK VLPVDLKGIL VE
//