LOCUS AFM04998.1 1908 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 surface protein 26-residue
repeat-containing protein protein.
ACCESSION CP003345-2486
PROTEIN_ID AFM04998.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_2637"
/note="PFAM: Mycoplasma protein of unknown function,
DUF285; TIGRFAM: Por secretion system C-terminal sorting
domain; bacterial surface protein 26-residue repeat"
/transl_table=11
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR005046"
/db_xref="InterPro:IPR008957"
/db_xref="InterPro:IPR008962"
BEGIN
1 MNNLLLSFLR KKNYIRGLTS LLFLALFFIG FATNSAYSQA FRTTWITTDG TITIPTNETG
61 YDYTVTWTNL TNAGVGNGSA IAQTGNYTIT GLENNSTYEV AISGDFPHFY MNFGSGKLKL
121 KTIEEWGNIA WTKMNSAFSG CENLTYNAID TPNLSLVRTM SDMFRECTSF DGNATINNWN
181 TENIINMSGM FAYASTFNQP LNNWNTAAVT DMNNMFLSTS FNQDIGSWNT AAVIDMNNMF
241 FGAQSFNQDI SSWNTAAVTD MSGMFVNTPF NQNISSWNTA AVTDMSSMFF AAQSFNQNIS
301 SWNTAVVTDM SKMLVGTTLF NQNLGTWNIE SIIQNNAFDG MYRMFSNSGL STANYDATLI
361 GWAAQNVNTG ISLGSFGLTY CTSETARNTL TSAPNNWTIT GDNLACPSTI PFRTTWITTD
421 GTITIPTNGG TGYNYTVTWT NLTNPTVGDG SASNQTGNYT LTGLENNSTY EIAISGDFPH
481 FYMGGSSSEQ PKIQTIEAWG DIAWTSMYAA FQGCENLTYT ATDSPNLAGV TDMSNMFHGC
541 ISFDGNTTMN NWNTENVTNI LFMFAGASTF NQPIGDWNVE NVTNMNGLFN SASSFNQNIE
601 DWNISNLTSL QGLFYYASSF NQPLNNWNTS SVTNMNLVFS GATSFNQPLD NWNTSSATEM
661 NSLFANARAF NQPIGNWNTG NVTNMTSVFN DAHSFNQNIG NWNTEHVTDM TQMFTNAPAF
721 NQDIRNWNTS NVTSMSQMFF MATSFDQNIG SWNTGNVINM QSMFGRATSF NQDISNWNTS
781 NVTSIGGMFF NATSFNQDIS NWNTENVTNM GATFSGASAF NQNLGNWNIE NVEQIISYYG
841 MSGMLDNSGL STANYDATLI GWAAQNVNPN ITLGATGLAY CASETARNIL TSAPNNWNIT
901 GDIFFCFEPE INLQGNGIDI VNNSTTPITA NATDFGSVLA CGSDTLTRIF TVQNTGNNNL
961 ITNNIIITGT HASDFSFGTF SSTIAPFSSA TFTVTFNPSG LGNRTATIEI NNNDSDESLY
1021 TFAIQGIGTA DNINPVIPTL ADETAQCQVI ALIPPTTTDN CAGTLTGTTG QVFPITTQGT
1081 TIVEWTFDDG NGNIATVNQN VIITDTEIPT ITAPSNITAN TDTGICTASN LTLGTATGTD
1141 NCGIPTFTND APTVFPIGLT NVTWTADDGN GNTATAIQTV MITAPVEINV TGNGNSIADG
1201 NSAASTINNT DFGDVTTDRT VTYTIENTGT QPLLISSITS DNTDFVVSII PTTVLAGSTS
1261 TFDVTFSSAS LGLSAANITI NNNDCDEAIY DFAVQATKTS TTPPPSGGGI GGTGTGGSTG
1321 GTTGGAGAVV PNPDLIFTGA SNMYNANRLD LSWVTNTTIS AFRLYRNNVL IRTFSGSSTD
1381 YSDANLAANT FYTYTLIAVI NGINSEPHTF EFWTAPNPPS VASVTDVCEE GIATVVLSSN
1441 ENGTGSSYKV YTEENGGNPV ASSDTTFFNL PSVNTQTDFY ISTVGGESGK EGERTKITVR
1501 VQPTFEAVIL RGSTQYSCTN SLVLQAGYIA NANSYTWFLD GNEVGTGQTF TATIEGNYEV
1561 RINKIVCEVT SEPVQVLLNQ VITAQIEENT TTQNSITFCE NGNLNAVSAG QDATYKWSLN
1621 GNIVGEEQNI AVSQSGTYTL SVAKGDCQVS TTINVAVATR PQMPTLSSTQ DSVCLGVTTT
1681 LSVQNIENGV TYKWLRNGNE INETGNSITV NEVGNYTVEV VSNVENSCTT ISEQIQVNGF
1741 EVIPTNLRIN EEQATLYLET QMAQAQITNI EWYFEGELNT ELGNTSEIRP TQEGNYYAII
1801 TNQNGCNYQT EIVYFPLDFV TGEEDIKTDT FKIYPNPSTG IFKVQFETVL LENTEVSIFD
1861 GIGRKIHTQT FEKGNQEFVI TLKNQPKGMY LIHFNHNNKV YSRQIVIE
//